sigven/phenOncoX sigven/phenOncoX

  • Stars
    star
    10
  • Rank 1,807,489 (Top 36 %)
  • Language
    R
  • License
    MIT License
  • Created over 3 years ago
  • Updated 3 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
sigven/phenOncoX
github

sigven

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Crossmapped phenotype ontologies for the oncology domain

More Repositories

1

pcgr

Personal Cancer Genome Reporter (PCGR)
R
253
star
2

cpsr

Cancer Predisposition Sequencing Reporter (CPSR)
R
56
star
3

gvanno

Generic human DNA variant annotation pipeline
Python
53
star
4

oncoEnrichR

Explore the cancer relevance of your gene list
R
49
star
5

vcf2tsvpy

Genomic VCF to tab-separated values
Python
47
star
6

pharmOncoX

Targeted and non-targeted anticancer drugs and drug regimens
R
28
star
7

cacao

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
R
21
star
8

geneOncoX

Human gene annotations for the oncology domain
R
6
star
9

cancerHotspots

R data package with mutational hotspots in cancer
R
2
star
10

sv_anno

Processing and annotation of somatic structural variants
Python
2
star
11

plsd

Prospective Lynch Syndrome Database (PLSD) - cumulative risk for cancer by age, genetic variant, and gender
R
2
star
12

gwasOncoX

Cancer variant data from genome-wide association studies (GWAS)
R
2
star
13

sigven.github.io

Minimal personal website
HTML
1
star
14

lscarisk

Estimation of cancer risk in Lynch Syndrome carriers (PLSD Shiny web application)
R
1
star
15

vcfmerge

MuTect2 + Strelka somatic VCF merger
Python
1
star
16

vcfhelpR

Functions to order, write and crossmap VCF/BED records in R
R
1
star
17

gtexRNA

Gene expression retrieval with GTEx API
R
1
star
18

epacts-docker

Dockerized version of EPACTS
Dockerfile
1
star
19

literatureVault

Biomedical literature reference data for precision cancer medicine
R
1
star