Discover @rchikhi Open Source projects

Rayan Chikhi (@rchikhi)

rchikhi

Stars
216
Global Rank 116,019 (Top 4 %)
Followers 151
Following 18
Registered about 13 years ago
Most used languages

Rust
36.8 %

C++
21.1 %

Python
10.5 %

C
10.5 %

Graphviz (DOT) 5.3 %

Jupyter Notebook
5.3 %

Shell
5.3 %

CSS
5.3 %
Location 🇫🇷 France
Country Total Rank 3,475
Country Ranking

Graphviz (DOT) 1

Rust
295

Jupyter Notebook
325

C++
662

Python
1,130

CSS
1,380

Shell
1,472

C
2,096

GPT-is-you

Personalized language model from Whatsapp chat history

rust-alignbench

Pairwise nucleotide alignment benchmark of Rust bindings

Jupyter Notebook

2022-pangenome-graphs-intro

debruijn

de Bruijn graph construction tool

python-bcalm

Python implementation of the BCALM algorithm

rust-seq2kminmers

Iterate k-min-mers from a DNA sequence in Rust

benchmphf

Benchmark of four minimal perfect hash libraries (phf, emphf, CMPH, Sux4J)

rust-parallelfastx

Parallel iteration of FASTA/FASTQ files, for when sequence order doesn't matter but speed does

Long-read-assembler-test-cases

A small set of test cases for long-read assembly tools

ntHash-AVX512

Various test improvements upon mirounga's AVX2 and AVX512 ports of ntHash2 in 2018

rust-superkmers

Construction of superkmers from a DNA sequence in rust

Scrooge-sys

Rust bindings for the CPU Scrooge sequence alignment library

ksw2-sys

Rust bindings for ksw2 alignment library

pairedRepetitions

Computes paired and unpaired exact repetitions within a genome sequence.

rust-kminmer2DHisto

Create a KAT-like 2D histogram with k-min-mers counting

2022-pangenome-aws

2022 WABI Pangenome workshop hackathon (AWS intro)

kmerthon

K-mer counting contest

csyncmers

Closed cyncmers in pure C

rust-mhdbg

ntHash-C

Rudimentary C wrapper for the NtHash nucleotide hashing library