Discover @pseudogene Open Source projects

Michaël Bekaert (@pseudogene)

pseudogene

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Global Rank 300,258 (Top 11 %)
Followers 17
Following 2
Registered almost 9 years ago
Most used languages

Perl
66.7 %

Shell
11.1 %

PHP
11.1 %

Python
5.6 %

Dockerfile
5.6 %

lava-dna

LAVA (LAMP Assay Versatile Analysis) is an extendable open-source Loop-mediated isothermal AMPlification (LAMP)

genetic-mapper

SVG Genetic Map Drawer

lamp-virus

Pipeline to develop one-step real-time RT-LAMP assays for specific detection of virus

radmap

Analyse RAD-tags and generate the Genetic Map with GWAS

ora

Olfactory Receptor family Assigner (bioperl module)

docker-stacks

Stacks is a software pipeline for building loci from short-read sequences - Now in a Docker

lamp-denv

Scripts and tools used to develop one-step real-time RT-LAMP assays for specific detection of dengue virus.

contiguator

A bacterial genomes finishing tool for structural insights on draft genomes - Now in a Docker

mkssl

Shell script to Create a Certificate Authority and Certificates with OpenSSL

gridref

Convert Irish/British Grid Reference points to WGS84

busco-docker

Busco in a Docker

fish_pedigree

Pedigree Chromosome Drawer

virus_genomes

Collect Virus genomes from "NCBI assembly" database (internal)

rad-scripts

Various RAD-seq related scripts

uniprime

A workflow-based platform for improved Universal Primer design

vibrio-tnseq

Tn-seq pipeline for Vibrio sp.

ratt

RATT: Rapid Annotation Transfer Tool (Wellcome Trust Sanger Institute)

irishgrid

Irish Grid Mapping System

lice-mitochondria

Scripts and tools used to analyse mitochondrial sequence variations between to strain of sea-lice (Lepeophtheirus salmonis)