Peter Menzel (@pmenzel)
github

pmenzel

Twitter logo Share LinkedIn logo Share Facebook logo Share
  • Stars
    star
    97
  • Global Rank 211,831 (Top 8 %)
  • Followers 59
  • Following 16
  • Registered over 12 years ago
  • Most used languages
    C
         26.7 %
    C++
         20.0 %
    Python
         20.0 %
    Perl
         13.3 %
    JavaScript
         6.7 %
    Shell
         6.7 %
    R
         6.7 %
  • Location 🇩🇪 Germany
  • Country Total Rank 10,295
  • Country Ranking
    Perl
         194
    C
         1,247
    R
         1,530
    C++
         2,267
    Python
         3,328
    Shell
         5,744

Top repositories

1

score-assemblies

Score and compare multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
Python
20
star
2

ont-assembly-snake

Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
Python
16
star
3

packCircles

C program for space-efficiently packing circles in a plane.
C
16
star
4

taxonomy-tools

C++ tools for NCBI taxonomy tasks
C++
11
star
5

download-refseq-genomes

Perl script to download genomes within a clade from NCBI Refseq
Perl
5
star
6

gh-actions

workflows for GitHub Actions
Perl
5
star
7

kiq

K-mer indexing and querying in RNA-Seq data
C++
5
star
8

stranded-coverage

Convert bam to two wig files with strand-specific coverage
C
3
star
9

plot-samtools-depth

Plot output of samtools depth to postscript
C
3
star
10

biq

Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasets
JavaScript
2
star
11

RILogo

Visualising RNA-RNA interactions
C++
2
star
12

sarscov2-analysis-resources

2
star
13

bam-to-clusters

C
2
star
14

raconnn

wrapper for running multiple assembly polishing rounds with racon
Shell
2
star
15

shinybibs

R
1
star
16

Recipes

1
star
17

illumina-assembly-snake

Snakemake wrapper for bacterial genome assembly from Illumina reads.
Python
1
star