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score-assemblies
Score and compare multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)ont-assembly-snake
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple toolspackCircles
C program for space-efficiently packing circles in a plane.taxonomy-tools
C++ tools for NCBI taxonomy tasksdownload-refseq-genomes
Perl script to download genomes within a clade from NCBI Refseqgh-actions
workflows for GitHub Actionskiq
K-mer indexing and querying in RNA-Seq dataplot-samtools-depth
Plot output of samtools depth to postscriptbiq
Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasetsRILogo
Visualising RNA-RNA interactionssarscov2-analysis-resources
bam-to-clusters
raconnn
wrapper for running multiple assembly polishing rounds with raconshinybibs
Recipes
illumina-assembly-snake
Snakemake wrapper for bacterial genome assembly from Illumina reads.Love Open Source and this site? Check out how you can help us