Joshua Klein (@mobiusklein)
github

mobiusklein

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  • Stars
    star
    178
  • Global Rank 134,888 (Top 5 %)
  • Followers 67
  • Following 24
  • Registered almost 13 years ago
  • Most used languages
    Python
         59.1 %
    Rust
         13.6 %
    Cython     9.1 %
    C
         4.5 %
    JavaScript
         4.5 %
    Julia
         4.5 %
    C++
         4.5 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 30,404
  • Country Ranking
    Cython     22
    Julia
         1,297
    Rust
         3,740
    Python
         8,321

Top repositories

1

cython_pyinstaller_example

A simple example repository describing the process of building a PyInstaller executable for a Cython-compiled program
Cython
36
star
2

ms_deisotope

A library for deisotoping and charge state deconvolution of complex mass spectra
Python
25
star
3

glypy

Glycan Analysis and Glycoinformatics Library for Python
Python
25
star
4

psims

A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML
Python
16
star
5

brainpy

A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations
Python
16
star
6

ms_peak_picker

A small library to provide peak picking for software processing mass spectrometry data
Cython
15
star
7

glycresoft

An LC-MS/MS glycan and glycopeptide search engine
Python
7
star
8

mzdata

Rust
6
star
9

pyteomics_raw_file_reader

An adapter for ThermoFisher's RawFileReader library that is compatible with the Pyteomics library
Python
4
star
10

glycopeptidepy

A library for describing the structure of glycopeptides
Python
4
star
11

taxonomylite

A simple one-file solution for those times when you want to check if one organism is a descended from another, but don't need a full phylogenetic tree manipulation library.
Python
4
star
12

pyteomics.cythonize

Cython Implementations of Common Pyteomics Functions
Python
3
star
13

mzsignal

A Rust library for basic signal processing in mass spectrometry
Rust
2
star
14

pysqlite

A fork of pysqlite to support an updated version of SQLite3.9 for Python 2.7
C
2
star
15

mzpeaks

A Rust crate for mass spectral peaks
Rust
1
star
16

pynumpress

A thin, more convenient wrapper around MSNumpress
C++
1
star
17

fragment_index

A really simplistic product ion index
Python
1
star
18

asinclude.jl

A small macro to make re-defining types in a REPL or IJulia Notebook possible without restarting.
Julia
1
star
19

ms_deisotope_raw_file_reader

An alternative implementation of ms_deisotope's Thermo RAW reader using RawFileReader instead of MSFileReader
Python
1
star
20

cyarray

An exercise in templating fast, resizable arrays for Cython that incur less Python overhead than the array module and expose a pure C representation which does not require any Python interaction.
Python
1
star
21

bioinformatics-web-technology-workshop-2015

A series of talks, demos, and workshop exercises to get up to speed with JavaScript and related web technologies for BU Bioinformatics students
JavaScript
1
star
22

impactwrench

Python CLI for LC-MS Signal Processing and LC-MS/MS Data Analysis
Python
1
star