mobiusklein/glycopeptidepy

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Python
Created about 8 years ago
Updated over 1 year ago

mobiusklein/glycopeptidepy

mobiusklein

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A library for describing the structure of glycopeptides

cython_pyinstaller_example

A simple example repository describing the process of building a PyInstaller executable for a Cython-compiled program

ms_deisotope

A library for deisotoping and charge state deconvolution of complex mass spectra

glypy

Glycan Analysis and Glycoinformatics Library for Python

psims

A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML

brainpy

A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations

ms_peak_picker

A small library to provide peak picking for software processing mass spectrometry data

glycresoft

An LC-MS/MS glycan and glycopeptide search engine

mzdata

pyteomics_raw_file_reader

An adapter for ThermoFisher's RawFileReader library that is compatible with the Pyteomics library

taxonomylite

A simple one-file solution for those times when you want to check if one organism is a descended from another, but don't need a full phylogenetic tree manipulation library.

pyteomics.cythonize

Cython Implementations of Common Pyteomics Functions

mzsignal

A Rust library for basic signal processing in mass spectrometry

pysqlite

A fork of pysqlite to support an updated version of SQLite3.9 for Python 2.7

mzpeaks

A Rust crate for mass spectral peaks

pynumpress

A thin, more convenient wrapper around MSNumpress

fragment_index

A really simplistic product ion index

asinclude.jl

A small macro to make re-defining types in a REPL or IJulia Notebook possible without restarting.

ms_deisotope_raw_file_reader

An alternative implementation of ms_deisotope's Thermo RAW reader using RawFileReader instead of MSFileReader

cyarray

An exercise in templating fast, resizable arrays for Cython that incur less Python overhead than the array module and expose a pure C representation which does not require any Python interaction.

bioinformatics-web-technology-workshop-2015

A series of talks, demos, and workshop exercises to get up to speed with JavaScript and related web technologies for BU Bioinformatics students

impactwrench

Python CLI for LC-MS Signal Processing and LC-MS/MS Data Analysis