Ben Lengerich (@blengerich)
github

blengerich

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Top repositories

1

CompBioDatasetsForMachineLearning

A Curated List of Computational Biology Datasets Suitable for Machine Learning
126
star
2

GenAMap

Visual Machine Learning of Genome-Phenome Associations
C++
22
star
3

Personalized_Regression

Personalized Regression
Python
15
star
4

explainable-cnn

Towards Visual Explanations for Convolutional Neural Networks via Input Resampling
Python
14
star
5

drpca

Differential Robust PCA
Jupyter Notebook
12
star
6

clehrity

Python
8
star
7

ConferenceCountdown

Webpage used to countdown time until ML/Compbio conference deadlines
JavaScript
5
star
8

Covid19-LatentCases

Estimate Total SARS-CoV-2 Infections from Limited Diagnostic Tests
Jupyter Notebook
5
star
9

Personalized_Regression_Neurips19

Code for Experiments Accompanying the paper "Learning Sample-Specific Models with Low-Rank Personalized Regression"
Jupyter Notebook
4
star
10

scContextualized

Handlers and utilities for Contextualized analysis of single-cell datasets.
Python
3
star
11

DeathByRoundNumbers

Glass-box ML reveals biases in medical practice at round number thresholds
Jupyter Notebook
2
star
12

GO_Translator

Simple utility functions for handling GO Terms in Python.
Python
2
star
13

gam_purification

Utilities for Purifying Generalized Additive Models
Python
2
star
14

ebm_utils

Utilities for Explainable Boosting Machines
Python
2
star
15

ContextualGAM

Contextualized Generalized Additive Models.
Jupyter Notebook
2
star
16

SnareSeq

Preprocessed Snare-seq
Jupyter Notebook
1
star
17

my_twilio

Simple utility functions to use Twilio to text myself.
Python
1
star
18

Dropout_Interactions

Code for "Dropout as a Regularizer of Interaction Effects"
Jupyter Notebook
1
star
19

BioContextualized

Python
1
star
20

Personalized_Regression_ISMB18

Code to Accompany the ISMB 2018 Paper "Personalized Regression Enables Sample-Specific Pan-Cancer Analysis"
Python
1
star