Bohdan Khomtchouk (@Bohdan-Khomtchouk)

Top repositories

1

shinyheatmap

Web application for enormous biological heatmaps
R
62
star
2

Biochat

Natural language processing of Gene Expression Omnibus data
Common Lisp
49
star
3

fastheatmap

Super high performance interactive heatmap software
JavaScript
29
star
4

PubData

Smart search engine for all bioinformatics databases worldwide
Python
28
star
5

Microscope

ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
R
23
star
6

biosemble

AI assembly of bioNLP wordnets
Python
19
star
7

HeatmapGenerator

Cross-platform GUI desktop application for making biological heatmaps
C
19
star
8

FTPwalker

PyPI package for traversing extremely large FTP directory trees
Python
17
star
9

geneXtendeR

R/Bioconductor package for optimized functional annotation of ChIP-seq data
R
9
star
10

ageBioPortal

R Shiny web application for aging-related diseases
R
7
star
11

cardioinformatics

Cardioinformatics: the nexus of bioinformatics and precision cardiology
TeX
7
star
12

NERO-nlp

NERO-nlp is a PyPI package for biomedical Named Entity (Recognition) Ontology
Python
5
star
13

gtf

R package to provide gene transfer format files from commonly investigated model organisms in ChIP-seq studies
R
5
star
14

geneSpark

geneSpark is a bioinformatics software program written in Python and Apache Spark for big data epigenetic histone modification ChIP-seq analysis.
Python
5
star
15

Smalls

miRNA-UTR approximate matching algorithms in R/Python/Bash
Python
4
star
16

NGStoolkit

One-stop shop for one-click NGS analyses from the command-line
Shell
3
star
17

Gaussian-distributed-codon-frequencies-of-genomes

Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)
D
3
star
18

happybiRthday

Calculate upcoming birthday dates of Github repos
R
3
star
19

Triglav

Variant calling format (vcf) file genomics pipeline for HPC and cloud
C
2
star
20

codon-usage

Machine learning scripts/analyses to accompany manuscript entitled "Codon usage bias levels predict taxonomic identity and genetic composition" (for code re-use/reproducibility purposes)
Jupyter Notebook
2
star
21

SUPERmerge

Diffuse ChIP-seq coverage island analysis algorithms
C
2
star
22

shinyDE

Web server for all differential expression (DE) callers
R
2
star
23

ENCODE_TF_geneXtendeR_analysis

geneXtendeR analysis on 547 ENCODE ChIP-seq datasets for both proximal and distal transcription factor (TF) binding peaks for all cell types
R
1
star
24

statement

Research statement et al.
1
star
25

ENCODE_histone_geneXtendeR_analysis

geneXtendeR analysis on 198 human histone modification ChIP-seq ENCODE datasets
R
1
star
26

peaX

Human ChIP-seq peaks data for ENCODE and ROADMAP Epigenomics
R
1
star
27

MovieSceneGiffer

An automated and more advanced and quick way of generating movie gifs
Python
1
star
28

Differential-expression-scripts

Miscellaneous differential gene expression scripts in R
R
1
star
29

Bohdan-Khomtchouk.github.io

Bohdan Khomtchouk's personal website
HTML
1
star