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shinyheatmap
Web application for enormous biological heatmapsBiochat
Natural language processing of Gene Expression Omnibus datafastheatmap
Super high performance interactive heatmap softwarePubData
Smart search engine for all bioinformatics databases worldwideMicroscope
ChIP-seq/RNA-seq analysis software suite for gene expression heatmapsbiosemble
AI assembly of bioNLP wordnetsHeatmapGenerator
Cross-platform GUI desktop application for making biological heatmapsFTPwalker
PyPI package for traversing extremely large FTP directory treesgeneXtendeR
R/Bioconductor package for optimized functional annotation of ChIP-seq dataageBioPortal
R Shiny web application for aging-related diseasescardioinformatics
Cardioinformatics: the nexus of bioinformatics and precision cardiologyNERO-nlp
NERO-nlp is a PyPI package for biomedical Named Entity (Recognition) Ontologygtf
R package to provide gene transfer format files from commonly investigated model organisms in ChIP-seq studiesgeneSpark
geneSpark is a bioinformatics software program written in Python and Apache Spark for big data epigenetic histone modification ChIP-seq analysis.NGStoolkit
One-stop shop for one-click NGS analyses from the command-lineGaussian-distributed-codon-frequencies-of-genomes
Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)happybiRthday
Calculate upcoming birthday dates of Github reposTriglav
Variant calling format (vcf) file genomics pipeline for HPC and cloudcodon-usage
Machine learning scripts/analyses to accompany manuscript entitled "Codon usage bias levels predict taxonomic identity and genetic composition" (for code re-use/reproducibility purposes)SUPERmerge
Diffuse ChIP-seq coverage island analysis algorithmsshinyDE
Web server for all differential expression (DE) callersENCODE_TF_geneXtendeR_analysis
geneXtendeR analysis on 547 ENCODE ChIP-seq datasets for both proximal and distal transcription factor (TF) binding peaks for all cell typesstatement
Research statement et al.ENCODE_histone_geneXtendeR_analysis
geneXtendeR analysis on 198 human histone modification ChIP-seq ENCODE datasetspeaX
Human ChIP-seq peaks data for ENCODE and ROADMAP EpigenomicsMovieSceneGiffer
An automated and more advanced and quick way of generating movie gifsDifferential-expression-scripts
Miscellaneous differential gene expression scripts in RBohdan-Khomtchouk.github.io
Bohdan Khomtchouk's personal websiteLove Open Source and this site? Check out how you can help us