wells-wood-research/timed-design

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wells-wood-research/timed-design

wells-wood-research

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Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis

PDBench

PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.

alphafold2-multiprocessing

Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing

de-stress

DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.

aposteriori

DNN based protein design.

BAlaS

Source code for the BUDE Alanine Scan web application.

oshea-j-interface-engineering-2021

DIGITAL Command Language

stam-m-wood-c-de-stress-2021

elm-molecules

An Elm package for working with molecular structure.

galloway-jg-hairpin-self-assembly-2020

Scripts and data for running particle analysis on AFM data

Jupyter Notebook

TTSCP_L102C_DSB-MBnThz-vs-TTSCP_L102C_DDSB-MBnThz