Wells Wood Research Group (@wells-wood-research)
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Top repositories

1

timed-design

Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
Python
47
star
2

PDBench

PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
Python
27
star
3

alphafold2-multiprocessing

Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
Python
22
star
4

de-stress

DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
C++
18
star
5

BAlaS

Source code for the BUDE Alanine Scan web application.
Elm
9
star
6

aposteriori

DNN based protein design.
Python
7
star
7

oshea-j-interface-engineering-2021

DIGITAL Command Language
2
star
8

drMD

Molecular Dynamics for Experimentalists
Python
1
star
9

stam-m-wood-c-de-stress-2021

Python
1
star
10

elm-molecules

An Elm package for working with molecular structure.
Elm
1
star
11

galloway-jg-hairpin-self-assembly-2020

Scripts and data for running particle analysis on AFM data
Jupyter Notebook
1
star
12

TTSCP_L102C_DSB-MBnThz-vs-TTSCP_L102C_DDSB-MBnThz

Python
1
star
13

ProteinMPNN_custom_training

Scripts for training ProteinMPNN with a custom dataset and other utils
Shell
1
star
14

chronowska-stam-wood-2024-protein-design-archive

Code supporting the Protein Design Archive (PDA) database publication
Jupyter Notebook
1
star