varnerlab/Minerva

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Julia
Created about 9 years ago
Updated about 9 years ago

varnerlab/Minerva

varnerlab

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Natural language compiler and biochemical model code generator in the Julia programming language

POETs.jl

POETs implementation in the Julia programming language

BSTModelKit.jl

A Julia package for building, and running Biochemical Systems Theory (BST) models

CHEME-4800-5800-Examples-Labs-Fall-2024

Repository for examples for the CHEME 4/5800 course at Cornell for Fall 2024

Jupyter Notebook

CHEME-5660-CourseRepository-Fall-2024

Course repository for CHEME 5660 at Cornell for the Fall 2024 semester

Jupyter Notebook

CHEME-1800-4800-Course-Repository-S23

Repository for the CHEME-1800-4800 computing course at Cornell University

CHEME-5660-Markets-Mayhem-Example-Notebooks

Jupyter Notebook

CHEME-5660-Markets-Mayhem-Book

Book for CHEME 5660 Markets, Mayhem for Scientists and Engineers

VLQuantitativeFinancePackage.jl

Package holding routines and types for CHEME 5660 at Cornell

DOPS_Manuscript_Repository

Repository for the DOPS manuscript

CHEME-1800-Computing-Book

Repository for the CHEME 1800 course notes

ChE525-Codes

Code for the lecture examples shown in ChE 525

Prostate_model_code_repository

Model code repository for the second generation prostate model

CHEME-5440-7770-Cornell-Spring-2022

Repository for CHEME 5440 and 7770 lectures, examples, problem sets, codes, etc.

Publication_DOPS_MATLAB_code_repository

Repository for the DOPS algorithm implemented in the MATLAB programming language

ENGRI-1120-Cornell-Varner

Repository for ENGRI 1120 examples and problems

CHEME-3130-F2020

Jupyter Notebook

Thermodynamics.jl

Repository for CHEME 3130 codes

ENGRI-1120-IntroToChemE-Example-Notebooks

Notebooks for the examples of ENGRI-1120 Introduction to Chemical Engineering at Cornell University

Jupyter Notebook

CHEME-5660-Course-Repository-F23

Course repository for CHEME 5660 Fall 2023 at Cornell University

Jupyter Notebook

Kwatee-NFBA-Plugin

Plugin for the generation of nonlinear flux balance models in the Julia programming language

SBMLToVFFParser

Utility to convert SBML files to VFF format

ENGRI-1120-IntroToChemE-Book

Repository for the ENGRI 1120 Book

CHEME-3130-F2017-Varner

GitHub repository for CHEME-3130 notes and code for F2017

ChE525-Lecture-Notes-S16

Lecture notes for ChE 525 S16 semester Purdue University

Recon-2.2-Model

Model repository for the Recon-2.2 model

cell_free_dynamic_fba_manuscript

Cell free dynamic flux balance analysis manuscript

JuHCM-Generator

Hybrid cybernetic model code generator written in the Julia programming language

HCM-FBA-Model-Code

Repository for the hybrid cybernetic modeling with flux balance analysis or HCM-FBA paper

Kinetic-CFPS-Model-Publication-Code

Repo for the kinetic cell free model code

Complement_model_repository

Repository for the effective complement model

SEML

SEML: A Simplified English Modeling Language for Constructing Biological Models in Julia

CHEME-5660-Examples-F23

Repository holding example notebooks and codes from CHEME 5660 Fall 2023

Jupyter Notebook

CHEME-5660-Labs-F23

Lab repository for CHEME 5660 for the Fall 2023 semester

Jupyter Notebook

GapFindFill.jl

Repository for a GapFill algorithm written in Julia

BST-S-Sytem-Model-Coagulation

Biochemical systems theory model of the extrinsic and intrinsic coagulation cascade

Sequence-Specific-FBA-CFPS-Publication-Code