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NoduleNet
[MICCAI' 19] NoduleNet: Decoupled False Positive Reduction for Pulmonary Nodule Detection and SegmentationDanQ
A hybrid convolutional and recurrent neural network for predicting the function of DNA sequencesDeepLung
WACV18 paper "DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification"D-GEX
Deep learning for gene expression inferenceUFold
UaNet
RP-Net
Code for Recurrent Mask Refinement for Few-Shot Medical Image Segmentation (ICCV 2021).FactorNet
A deep learning package for predicting TF bindingEXTREME
An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting datatree-hmm
Tree hidden Markov model for learning epigenetic states in multiple cell typesHLA-bind
Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding predictionDeepCons
Understanding sequence conservation with deep learningDeepEM-for-Weakly-Supervised-Detection
MICCAI18 DeepEM: Deep 3D ConvNets with EM for Weakly Supervised Pulmonary Nodule DetectionGBMCI
The implementation of gradient boosting machine for concordance index learning.esm-efficient
SAILER
BioML
TEMT
Transcripts abundances estimation from heterogeneous tissue sample of RNA-Seq data (TEMT)ChestXRay
MixClone
A mixture model for inferring tumor subclonal populationsSAILERX
scFAN
genomix
Parallel genome assembly using HyracksEpiOut
A statistical method to detect, analyze and visualize aberrations in chromatin accessibility (ATAC-seq, DNase-Seq) and quantify its effect on gene expression.Rainfall
RBPnet
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