Discover uci-cbcl/NoduleNet Open Source project

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[MICCAI' 19] NoduleNet: Decoupled False Positive Reduction for Pulmonary Nodule Detection and Segmentation

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A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences

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WACV18 paper "DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification"

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D-GEX

Deep learning for gene expression inference

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Code for Recurrent Mask Refinement for Few-Shot Medical Image Segmentation (ICCV 2021).

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EXTREME

An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data

tree-hmm

Tree hidden Markov model for learning epigenetic states in multiple cell types

Python

HLA-bind

Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction

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DeepCons

Understanding sequence conservation with deep learning

HTML

DeepEM-for-Weakly-Supervised-Detection

MICCAI18 DeepEM: Deep 3D ConvNets with EM for Weakly Supervised Pulmonary Nodule Detection

GBMCI

The implementation of gradient boosting machine for concordance index learning.

C++

esm-efficient

Python

SAILER

Jupyter Notebook

BioML

TEMT

Transcripts abundances estimation from heterogeneous tissue sample of RNA-Seq data (TEMT)

Python

ChestXRay

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MixClone

A mixture model for inferring tumor subclonal populations

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SAILERX

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scFAN

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genomix

Parallel genome assembly using Hyracks

Java

EpiOut

A statistical method to detect, analyze and visualize aberrations in chromatin accessibility (ATAC-seq, DNase-Seq) and quantify its effect on gene expression.

Python

Rainfall

MATLAB

RBPnet

Python

uci-cbcl/NoduleNet

uci-cbcl

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