uci-cbcl/esm-efficient

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12
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Language
Python
Created about 1 month ago
Updated about 1 month ago

uci-cbcl/esm-efficient

uci-cbcl

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NoduleNet

[MICCAI' 19] NoduleNet: Decoupled False Positive Reduction for Pulmonary Nodule Detection and Segmentation

DanQ

A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences

DeepLung

WACV18 paper "DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification"

D-GEX

Deep learning for gene expression inference

UFold

UaNet

Jupyter Notebook

RP-Net

Code for Recurrent Mask Refinement for Few-Shot Medical Image Segmentation (ICCV 2021).

FactorNet

A deep learning package for predicting TF binding

PyLOH

Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity

EXTREME

An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data

tree-hmm

Tree hidden Markov model for learning epigenetic states in multiple cell types

HLA-bind

Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction

DeepCons

Understanding sequence conservation with deep learning

DeepEM-for-Weakly-Supervised-Detection

MICCAI18 DeepEM: Deep 3D ConvNets with EM for Weakly Supervised Pulmonary Nodule Detection

GBMCI

The implementation of gradient boosting machine for concordance index learning.

SAILER

Jupyter Notebook

BioML

TEMT

Transcripts abundances estimation from heterogeneous tissue sample of RNA-Seq data (TEMT)

ChestXRay

Jupyter Notebook

MixClone

A mixture model for inferring tumor subclonal populations

SAILERX

Jupyter Notebook

scFAN

genomix

Parallel genome assembly using Hyracks

EpiOut

A statistical method to detect, analyze and visualize aberrations in chromatin accessibility (ATAC-seq, DNase-Seq) and quantify its effect on gene expression.

Rainfall

RBPnet