scholer/cadnano_utils scholer/cadnano_utils

  • Stars
    star
    1
  • Language
    Python
  • License
    GNU Affero Genera...
  • Created over 9 years ago
  • Updated over 9 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
scholer/cadnano_utils
github

scholer

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Various utility scripts for cadnano DNA origami designs

More Repositories

1

pptx-downsizer

Python tool for downsizing Microsoft PowerPoint presentations (pptx) files.
Python
19
star
2

actionista-todoist

CLI tool to manage your Todoist tasks from the command line, using powerful filters to select, print, reschedule, and complete tasks in a batch-wise fashion.
Python
12
star
3

ooxml-git-hooks

Pre-commit and post-checkout hooks making git better suited for version control of zipped Office Open XML files, e.g. Word/.docx, Excel/.xlsx, and PowerPoint/.pptx files.
Python
12
star
4

gelutils

Tools and utilities for converting and annotating GEL files (and TIFF, PNG).
Python
8
star
5

cookiesnatcher

Python library to extract and decrypt cookies from Chrome's sqlite database.
Python
8
star
6

git-status-checker

Yet another git status checker, in python. Because none of the bash-based ones were working on my Windows box with git-bash...
Python
7
star
7

sublime_logging_control

Enable and adjust logging output from the standard logging library. (Plugin for Sublime Text 2/3+)
Python
6
star
8

rsenv

Various python functions and CLI utilities that I use for my day-to-day work.
Python
4
star
9

TextToSpeech

Text-to-speech (TTS) plugin for Sublime Text.
Python
3
star
10

cadnano_staplestatter

Various tools for analyzing staple strands in DNA origami structures created with cadnano.
Python
3
star
11

ezfetcher

Download pdf files from scientific journals through your university's proxy (currently only EzProxy). This code is mostly for conceptual demonstration; implementing this as a browser (or Zotero) extension would be more useful.
Python
3
star
12

DWSfromCSV

Small python script used to populate an epMotion/epBlue DWS file with commands from a CSV file.
Python
2
star
13

instaporter

Do you have access to access-protected content? Want to read add it to your Instapaper reading list? Instaporter allows you to retrieve protected content and then upload it to your Instapaper reading list.
Python
2
star
14

micrograph_utils

Collection of python scripts for processing microscopy images (micrographs) either from electron microscopes (TEM/SEM) or regular optical microscopes.
2
star
15

nascent

Python library for simulating and visualizing self-assembly of DNA structures
Python
1
star
16

Sublime_TimeTracker

Python
1
star
17

cadnano_console

Adds an interactive console to cadnano2. Nice to have in case you forget to specify the interactive ("-i") argument when launching cadnano.
Python
1
star
18

filetransformers

Various adhoc utilities to transform files from one format to another.
Python
1
star
19

exchange-rate-checker

Get currency exchange rate from service provider and notify if above/below a certain limit.
Python
1
star
20

TimeTracker

Analyze simple timetracker data in line-by-line format.
Python
1
star
21

zepto-eln-server

Pico-inspired web server for serving Markdown documents as HTML-compiled web pages, written in Python.
Python
1
star
22

sublime_ELN_utils

A set of commands to make it easier to use Sublime Text to create lab experiments and take notes.
Python
1
star
23

Sublime_AutoRemote

Send messages to your AutoRemote-enabled phone. Can be used to trigger virtually any action on your phone via Tasker.
Python
1
star
24

imagestack-pyper

Python CLIs for reading and converting stacked image files (e.g. TIFF movies). Uses PIMS for reading images either to stdout or directly to ffmpeg for movie conversion.
Python
1
star
25

cadnano_navigator

Provides a GUI which uses the cadnano_api to navigate the view, e.g. zooming to a particular strand and following an oligo from helix to helix.
Python
1
star
26

zepto-markdown

Package for parsing and converting Markdown documents. Features include YAML front-matter extraction, templating, and macros.
1
star
27

Sublime_Mock_API

Simple package to avoid syntax errors in Sublime Text plugins.
Python
1
star
28

PyRemoteRestMap

Python port of the RemoteRestMap perl library for parsing results from http://restrictionmapper.org. (Note: This is not a REST interface.)
Python
1
star
29

Zepto-LIMS

Zepto-LIMS: Laboratory inventory tracker for tubes and freezer boxes using 2D barcodes (QR codes, datamatrix, etc).
Jupyter Notebook
1
star
30

sublime-zpl-label-print

Sublime Text plugin for printing ZPL labels to Zebra-compatible label printers by filling a template with selected data values.
Python
1
star
31

tts_preprocessor

Optimize your text input for Text-To-Speech synthesis, stripping formatting (HTML, Latex, RTF) and replace abbreviations.
Python
1
star