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treeval
Pipelines for the production of Treeval datablobtoolkit
Nextflow pipeline for BlobToolKit for Sanger ToL production suitereadmapping
Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.gda
Genome Decomposition Analysis pipelinegenomeassembly
Implementation of ToL genome assembly workflowstolqc
ToLQC API and website. This is a mirror of the GitLab repository - please don't commit to this repo.variantcalling
This Nextflow DSL2 pipeline calls variants on long read alignment. It is run after sanger-tol/readmapping in the Sanger ToL production suite.tol-track
Tracking scripts for Sanger Tree of Life sequencing datadocker-images
asg-assembly-course-2021
Notes for the 2021 Aquatic Symbiosis Genomics assembly coursesequencecomposition
Nextflow pipeline to extract statistics from a genome about its sequence compositionnf-core-pipeline
Guidelines and subworkflows for Nextflow pipeline development in Sanger ToLtol-qc
Scripts to generate ToLQC reports for the Sanger Tree of Life programmevectorDB
adaptor sequences of Pacbio Hifi readsmergePacBioCCSreports
Merge multiple PacBio CCS report filescurationpretext
A Nextflow DSL2 pipeline for pretext generation in curationensemblrepeatdownload
Nextflow pipeline to download repeat annotations from Ensembl onto the Tree of Life directory structureensemblgenedownload
Nextflow pipeline to download gene annotations from Ensembl onto the Tree of Life directory structureinsdcdownload
Nextflow pipeline to download assemblies from INSDC and add them to the Tree of Life directoriesLove Open Source and this site? Check out how you can help us