sandberg-lab/txburst sandberg-lab/txburst

  • Stars
    star
    37
  • Rank 720,807 (Top 15 %)
  • Language
    Jupyter Notebook
  • Created about 7 years ago
  • Updated 7 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
sandberg-lab/txburst
github

sandberg-lab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Larsson et. al 2019).

More Repositories

1

Smart-seq3

Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
Python
49
star
2

Spreading-Correction

Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
Jupyter Notebook
15
star
3

dataprivacy

Python
14
star
4

NASC-seq

Code and analysis pipeline for NASC-seq.
Python
11
star
5

lncRNAs_bursting

Count tables, R Code and Analyses for Johnsson et al., 2021
R
5
star
6

NASC-seq2

Python
2
star
7

Smart-seq3xpress

Files related to Smart-seq3xpress
1
star
8

aRME_and_bursting

Code for analysis described in the article "Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance" (Larsson et. al 2021).
Jupyter Notebook
1
star