Sandberg lab (@sandberg-lab)
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Top repositories

1

Smart-seq3

Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
Python
49
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2

txburst

Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Larsson et. al 2019).
Jupyter Notebook
37
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3

Spreading-Correction

Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
Jupyter Notebook
15
star
4

dataprivacy

Python
14
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5

NASC-seq

Code and analysis pipeline for NASC-seq.
Python
11
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6

lncRNAs_bursting

Count tables, R Code and Analyses for Johnsson et al., 2021
R
5
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7

NASC-seq2

Python
2
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8

Smart-seq3xpress

Files related to Smart-seq3xpress
1
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9

aRME_and_bursting

Code for analysis described in the article "Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance" (Larsson et. al 2021).
Jupyter Notebook
1
star