s-andrews/nextflow_pipelines

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s-andrews/nextflow_pipelines

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The set of NGS processing pipelines used at Babraham

FastQC

A quality control analysis tool for high throughput sequencing data

SeqMonk

SeqMonk NGS visualisation and analysis tool

BamQC

Mapped QC analysis program

sradownloader

A script to make downloading of SRA/GEO data easier

virusbreak

A web based game to simulate virus outbreaks

redotable

A dotplot application for DNA/RNA sequence

10XQC

A system for monitoring the quality of 10X single cell data

compter

An application to graphically summarise kmer enrichment in a set of sequences

sierra

A sequencing facility LIMS system

illuminaprocessing

The scripts for doing automated run processing from our sequencing facility

RasbellyPi

A custom doorbell application for Raspberry Pi

forkcall

A program to call the location of replication forks based on TrAEL-Seq data

autosftp

An automated data transfer system

bioinformaticsrates

A record of bioinformatics hourly rates for core facilities

powerguide

A web based system for guided power analysis

celllinesleuth

A program to identify human cancer cell lines from NGS data

intensitydiff

An R package to perform the intensity difference statistical calculation

dose_response

This is the code which accompanies the demonstration of dose response curve plotting in R which is shown in https://youtu.be/yZRvzYsWqJw

singularityconda

A test of singularity with conda

canonicalsplicecount

A program to quantitate RNA-Seq data based on the presence of canonical splice sites

dedupcheck

A quick and dirty check for duplicate files in a large filesystem

christmas2020

The Babraham Bioinformatics 2020 Xmas Card

cycledb

A searchable web database of cycle rides

image-sound-sync

An application to synchronise a set of images with significant events in a sound file

proteostasis_gpt

A custom GPT for questions about proteostasis

machinelearning

Code used for the machine learning course