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socru
Order and orientation of complete bacterial genomesdadaist2
Dadaist2 🟨 Highway to Ralbatradis
Comparative TraDIS analysisphage-annotation-workshop
Phage Annotation Workshop 2021parallel-virfinder
Run virfinder in paralleltatajuba
Identification and classification of homopolymeric tracts from reads.scagaire
uvaia
Reference-based alignment and sequence database search of SARS-CoV-2 genomes.datasciencegroup
Scripts and docs from the datascienceatqib groupgalaxy-tools
A collection of bioinformatics tools for use with galaxy written at Quadram Institutegmh-sops
SOPs for Gut Microbes and Healthstart-asap
Initialize an ASA³P configuration filefaprotax-tools
Parser and annotation tools using the FAPROTAX database (Louca S. et al., 2016)QuaTradis
A pipeline to analyse transposon directed insertion-site sequencingncov2019-artic-nf
phylo-methods
ronaldo
Comparison tool of SARSCOV2 seq and assaysotusfocus
clean OTU tablecoronahit_guppy
Configuration for demultiplexing coronaHiT data with Guppyirida-plugin-qi-taxon
knockout-validation
irida-plugin-qi-phylo
streptococcus_kmers
K-mer spectrum analysis for Streptococcus genus to differentiate Strep pneumonia and other Streptococcus sppphylosequel
Where Data Becomes Phyloseq Magic!interleafq
📦 Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.template_qib_report
Template of a (PDF/HTML) report document using pandocirida-plugin-qi-typing
NBI-Slurm
Experimental interface to slurmvirometools
Scripts for virome analysisLoRTIS
Workflow that takes as input a reference genome and long reads from sequencing then produces an insertion plot.Love Open Source and this site? Check out how you can help us