quadram-institute-bioscience/QuaTradis quadram-institute-bioscience/QuaTradis

  • Stars
    star
    2
  • Language Gnuplot
  • License
    GNU General Publi...
  • Created almost 3 years ago
  • Updated 5 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
quadram-institute-bioscience/QuaTradis
github

quadram-institute-bioscience

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

A pipeline to analyse transposon directed insertion-site sequencing

More Repositories

1

socru

Order and orientation of complete bacterial genomes
Python
26
star
2

dadaist2

Dadaist2 🟨 Highway to R
HTML
13
star
3

albatradis

Comparative TraDIS analysis
Gnuplot
8
star
4

phage-annotation-workshop

Phage Annotation Workshop 2021
HTML
7
star
5

parallel-virfinder

Run virfinder in parallel
Python
7
star
6

tatajuba

Identification and classification of homopolymeric tracts from reads.
C
6
star
7

scagaire

Python
5
star
8

uvaia

Reference-based alignment and sequence database search of SARS-CoV-2 genomes.
C
4
star
9

datasciencegroup

Scripts and docs from the datascienceatqib group
Jupyter Notebook
4
star
10

galaxy-tools

A collection of bioinformatics tools for use with galaxy written at Quadram Institute
HTML
4
star
11

gmh-sops

SOPs for Gut Microbes and Health
HTML
2
star
12

seqfu

Legacy repository (https://telatin.github.io/seqfu2)
2
star
13

start-asap

Initialize an ASAΒ³P configuration file
Perl
2
star
14

faprotax-tools

Parser and annotation tools using the FAPROTAX database (Louca S. et al., 2016)
R
2
star
15

ncov2019-artic-nf

Python
2
star
16

phylo-methods

1
star
17

ronaldo

Comparison tool of SARSCOV2 seq and assays
Python
1
star
18

otusfocus

clean OTU table
HTML
1
star
19

coronahit_guppy

Configuration for demultiplexing coronaHiT data with Guppy
1
star
20

irida-plugin-qi-taxon

Java
1
star
21

knockout-validation

Python
1
star
22

irida-plugin-qi-phylo

HTML
1
star
23

streptococcus_kmers

K-mer spectrum analysis for Streptococcus genus to differentiate Strep pneumonia and other Streptococcus spp
HTML
1
star
24

phylosequel

Where Data Becomes Phyloseq Magic!
Python
1
star
25

interleafq

πŸ“¦ Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.
Perl
1
star
26

template_qib_report

Template of a (PDF/HTML) report document using pandoc
CSS
1
star
27

irida-plugin-qi-typing

Java
1
star
28

NBI-Slurm

Experimental interface to slurm
Perl
1
star
29

virometools

Scripts for virome analysis
Python
1
star
30

LoRTIS

Workflow that takes as input a reference genome and long reads from sequencing then produces an insertion plot.
Python
1
star