Discover pegasus-isi/1000genome-workflow Open Source project

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Apache License 2.0
Created about 8 years ago
Updated 2 months ago

pegasus-isi

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Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project

pegasus

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

Java

185

WorkflowGenerator

Synthetic workflow generators

Java

montage-workflow-v3

A new Python DAX generator version of the classic Montage workflow. This workflow uses the Montage toolkit to re-project, background correct and add astronomical images into custom mosaics.

Python

precip

Pegasus Repeatable Experiments for the Cloud in Python

Python

montage-workflow-v2

A new Python DAX generator version of the classic Montage workflow

Python

craft

JSON schema for design flows (DARPA CRAFT Program)

Python

Soybean-Workflow

Python

pegasus-olcf-kubernetes

Dockerfile

dipa-workflow

Pegasus workflow for the DIPA Pipeline at Waisman Center

Python

darpa_population_modeling

Sample workflow to demonstrate how Pegasus can be used to manage the population modeling tools in the MINT project

Python

SAGA-Sample-Workflow

Example on how to run Pegasus workflows on the ISI SAGA cluster

Python

ACME-Workflow

Pegasus workflow for ACME climate models

Shell

SNS-Workflow

SNS Refinement Workflow

Python

lung-instance-segmentation-workflow

Instance segmentation with U-Net/Mask R-CNN workflow using Keras & Ray Tune

Python

homebrew-tools

Homebrew Formulas for Pegasus

Ruby

pegasus-docker-build

Dockerfiles to build containers to build and test Pegasus on variety of platforms.

Dockerfile

ACCESS-Pegasus-Examples

Pegasus Workflows examples including the Pegasus tutorial, to run on ACCESS resources.

Jupyter Notebook

pegasus-llnl

Repository for work with LLNL

Shell

PGen-GenomicVariations-Workflow

Python

time-driven-data-placement

Code to recreate algorithm from the paper "A Time-driven Data Placement Strategy for a Scientific Workflow Combining Edge Computing and Cloud Computing"

Jupyter Notebook

pegasus-service

Pegasus as a Service

Python

freesurfer-osg-workflow

A Pegasus workflow for running FreeSurfer on the Open Science Grid

Python

BLAST-Workflow

Pegasus workflow for NCBI BLAST - Basic Local Alignment Search Tool

Python

edge-synthetic-workflow

Python

jetstream-pegasus

Example setup for HTCondor/Pegasus VMs on Jetstream

SaltStack

seismology-workflow

Python

pegasus-glidein

A simple HTCondor glidein for HPC systems

Shell

spark-workflow

Shell

pegasus-gtfar

ISI & Keck School collaboration to implement a Pegasus workflow with a GUI front-end for the GTFAR workflow.

Python

GlideinLite

Shell

SPLINTER-Workflow

Pegasus workflow for SPLINTER

Python

pegasus-split-example

Simple hierarchical workflow demonstrating dynamic split/process/merge

Python

TACC-Wrangler-Pegasus-Example

Python

process-workflow

Process workflow example

Python

dibbs-data-collection-setup

Quickly setup RabbitMQ, an ELK stack, and Grafana to start collecting and visualizing data from Pegasus workflow runs.

pegasus-docker-deploy

Set of scripts for deploying Pegasus into Docker containers using overlay network

Shell

pegasus-wlpipe

For running Weak Lensing pipelines through Pegasus

Python

pegasus-sage

Pegasus Sage Workflows

Jupyter Notebook

pegasus-metrics

Anonymous usage metrics collection and reporting for Pegasus

Python

AutoDock-Vina-Workflow

AutoDock Vina Pegasus workflow for the OSG Connect infrastructure

Python

single-cell-rna-bioconductor

data-placement-algo-example

Pegasus example to recreate example from the paper "A Time-driven Data Placement Strategy for a Scientific Workflow Combining Edge Computing and Cloud Computing"

Python

page-imputation

Pegasus Imputation Workflows for PAGE2

Shell

pegasus-fb-nlp

Example of a Facebook NLP pipeline

Python

casa-containers

Dockerfile

pegasus-cycles-ui

JavaScript

cwl-to-dax-reference

example CWL workflows, corresponding DAX workflows, and test scripts to convert CWL to DAX

Common Workflow Language

galaxy-classification-workflow

Python

orcasound-workflow

Pegasus workflow for the orca github actions workflow

Python

tutorials

Repository for tutorial materials, that are specific to a conference, or an organization. This is not the repo for the main pegasus tutorial that is in the pegasus documentation.

HTML

SNS-MCViNE

Python

pegasus-isi/1000genome-workflow

pegasus-isi

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