Explore @pegasus-isi Open Source projects

Pegasus Project (@pegasus-isi)

pegasus-isi

Stars
336
Global Org. Rank 30,253 (Top 10 %)
Registered almost 12 years ago
Most used languages

Python
56.9 %

Shell
13.7 %

Jupyter Notebook
7.8 %

Dockerfile
5.9 %

Java
3.9 %

R
2.0 %

SaltStack 2.0 %

HTML
2.0 %

Ruby
2.0 %

JavaScript
2.0 %

Common Workflow Language 2.0 %
Location 🇺🇸 United States
Country Total Rank 22,011
Country Ranking

Common Workflow Language 43

SaltStack 102

Java
1,302

Dockerfile
1,448

Jupyter Notebook
6,395

Shell
8,447

R
8,539

pegasus

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

WorkflowGenerator

Synthetic workflow generators

1000genome-workflow

Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project

Jupyter Notebook

montage-workflow-v3

A new Python DAX generator version of the classic Montage workflow. This workflow uses the Montage toolkit to re-project, background correct and add astronomical images into custom mosaics.

precip

Pegasus Repeatable Experiments for the Cloud in Python

montage-workflow-v2

A new Python DAX generator version of the classic Montage workflow

craft

JSON schema for design flows (DARPA CRAFT Program)

Soybean-Workflow

pegasus-olcf-kubernetes

dipa-workflow

Pegasus workflow for the DIPA Pipeline at Waisman Center

darpa_population_modeling

Sample workflow to demonstrate how Pegasus can be used to manage the population modeling tools in the MINT project

SAGA-Sample-Workflow

Example on how to run Pegasus workflows on the ISI SAGA cluster

ACME-Workflow

Pegasus workflow for ACME climate models

SNS-Workflow

SNS Refinement Workflow

lung-instance-segmentation-workflow

Instance segmentation with U-Net/Mask R-CNN workflow using Keras & Ray Tune

homebrew-tools

Homebrew Formulas for Pegasus

pegasus-docker-build

Dockerfiles to build containers to build and test Pegasus on variety of platforms.

ACCESS-Pegasus-Examples

Pegasus Workflows examples including the Pegasus tutorial, to run on ACCESS resources.

Jupyter Notebook

pegasus-llnl

Repository for work with LLNL

PGen-GenomicVariations-Workflow

time-driven-data-placement

Code to recreate algorithm from the paper "A Time-driven Data Placement Strategy for a Scientific Workflow Combining Edge Computing and Cloud Computing"

Jupyter Notebook

pegasus-service

Pegasus as a Service

freesurfer-osg-workflow

A Pegasus workflow for running FreeSurfer on the Open Science Grid

BLAST-Workflow

Pegasus workflow for NCBI BLAST - Basic Local Alignment Search Tool

edge-synthetic-workflow

jetstream-pegasus

Example setup for HTCondor/Pegasus VMs on Jetstream

seismology-workflow

pegasus-glidein

A simple HTCondor glidein for HPC systems

spark-workflow

pegasus-gtfar

ISI & Keck School collaboration to implement a Pegasus workflow with a GUI front-end for the GTFAR workflow.

GlideinLite

SPLINTER-Workflow

Pegasus workflow for SPLINTER

pegasus-split-example

Simple hierarchical workflow demonstrating dynamic split/process/merge

TACC-Wrangler-Pegasus-Example

process-workflow

Process workflow example

dibbs-data-collection-setup

Quickly setup RabbitMQ, an ELK stack, and Grafana to start collecting and visualizing data from Pegasus workflow runs.

pegasus-docker-deploy

Set of scripts for deploying Pegasus into Docker containers using overlay network

pegasus-wlpipe

For running Weak Lensing pipelines through Pegasus

pegasus-sage

Pegasus Sage Workflows

Jupyter Notebook

pegasus-metrics

Anonymous usage metrics collection and reporting for Pegasus

AutoDock-Vina-Workflow

AutoDock Vina Pegasus workflow for the OSG Connect infrastructure

single-cell-rna-bioconductor

data-placement-algo-example

Pegasus example to recreate example from the paper "A Time-driven Data Placement Strategy for a Scientific Workflow Combining Edge Computing and Cloud Computing"

page-imputation

Pegasus Imputation Workflows for PAGE2

pegasus-fb-nlp

Example of a Facebook NLP pipeline

casa-containers

pegasus-cycles-ui

cwl-to-dax-reference

example CWL workflows, corresponding DAX workflows, and test scripts to convert CWL to DAX

Common Workflow Language

galaxy-classification-workflow

orcasound-workflow

Pegasus workflow for the orca github actions workflow

tutorials

Repository for tutorial materials, that are specific to a conference, or an organization. This is not the repo for the main pegasus tutorial that is in the pegasus documentation.

SNS-MCViNE