ncbo/umls2rdf ncbo/umls2rdf

  • Stars
    star
    82
  • Rank 396,546 (Top 8 %)
  • Language
    Python
  • License
    Other
  • Created almost 13 years ago
  • Updated over 1 year ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
ncbo/umls2rdf
github

ncbo

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.

More Repositories

1

ncbo_rest_sample_code

Sample code that demonstrates the use of the NCBO REST services
Java
39
star
2

sparql-code-examples

Java, Perl, Python, Javascript, Ruby, etc. examples to query alphasparql.bioontology.org
Java
34
star
3

bioportal-project

Serves to consolidate (in Zenhub) all public issues in BioPortal
7
star
4

kg-bioportal

BioPortal, as a Knowledge Graph
Python
5
star
5

virtual_appliance

Bioportal Virtual Appliance
SCSS
5
star
6

BioPortal-to-KGX

Assemble a BioPortal Knowledge Graph
Python
4
star
7

ncbo_annotator_ruby_client

The NCBO Annotator Gem is a Ruby client for NCBO's Annotator Web service
Ruby
4
star
8

ontolobridge_api_client

Ontolobridge REST API client
Ruby
3
star
9

pubmed_xml2rdbms

Loads citation records from the annual MEDLINE/PubMed XML format distribution into a MySQL table
Java
3
star
10

healthdata_metadata_challenge

Java
3
star
11

mc_sinatra

MC Sinatra is a skeleton Sinatra application and bootstrap/runtime environment that allows for the use of models, controllers, and helpers for creating simple, easy-to-understand web APIs.
Ruby
2
star
12

resource_access_tools

Java-based code for running the Resource Access Tool population
Java
2
star
13

ontoportal_utilities

A set of scripts for benchmarking and troubleshooting issues with NCBO software
Ruby
2
star
14

hcomp_ontology_evaluation

Source code for creating and managing Mechanical Turk tasks for ontology evaluation via human computation
Java
2
star
15

sparql_http

SPARQL_HTTP is a SPARQL HTTP Client for Ruby. It is developed together with the Goo library but it hash been designed as an standalone component that can be used separately.
Ruby
2
star
16

ncbo_migration

Scripts for migrating data from older NCBO systems to newer ones
Ruby
1
star
17

resource_index

Library for working with NCBO's Resource Index backend system
Ruby
1
star
18

resource_index_ruby_client

The NCBO Resource Index Gem is a Ruby client for NCBO's Rsource Index Web service
Ruby
1
star
19

ncbo_api_benchmark

A set scripts to create logs of calls that can be run in Jmeter. Only compatible with the new infrastructure to be released in 2013.
Python
1
star
20

ncbo.github.io

1
star
21

prototype_bioportal_rest_rails

This is a prototype BioPortal web service using rails-api as the framework
Ruby
1
star
22

resource_index_workflow

Java
1
star
23

knowledge

Knowledge transfer materials
1
star
24

bioportal_mappings

A project to generate ontology mappings for BioPortal
Ruby
1
star
25

bioportal-sparql-proxy

This is a django app that acts as a proxy for BioPortal's public triple store. It uses a modified version of the SNORQL browser to help the navigation across graphs and codemirror for syntax highlighting.
JavaScript
1
star
26

bfo

This is a copy of The Basic Formal Ontology (BFO). For testing and reliability NCBO/BioPortal needs to maintain its own copy of BFO.
1
star