National Center for Biomedical Ontology (@ncbo)
Guthub

ncbo

Twitter logo Share LinkedIn logo Share Facebook logo Share
  • Stars
    star
    330
  • Global Org. Rank 30,635 (Top 10 %)
  • Registered over 14 years ago
  • Most used languages
    Ruby
         43.5 %
    Java
         30.4 %
    Python
         17.4 %
    SCSS     4.3 %
    JavaScript
         4.3 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 20,760
  • Country Ranking
    SCSS     878
    Java
         2,647
    Ruby
         5,970
    Python
         9,327

Top repositories

1

umls2rdf

These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
Python
82
star
2

ncbo_rest_sample_code

Sample code that demonstrates the use of the NCBO REST services
Java
39
star
3

sparql-code-examples

Java, Perl, Python, Javascript, Ruby, etc. examples to query alphasparql.bioontology.org
Java
34
star
4

bioportal-project

Serves to consolidate (in Zenhub) all public issues in BioPortal
7
star
5

kg-bioportal

BioPortal, as a Knowledge Graph
Python
5
star
6

virtual_appliance

Bioportal Virtual Appliance
SCSS
5
star
7

BioPortal-to-KGX

Assemble a BioPortal Knowledge Graph
Python
4
star
8

ncbo_annotator_ruby_client

The NCBO Annotator Gem is a Ruby client for NCBO's Annotator Web service
Ruby
4
star
9

ontolobridge_api_client

Ontolobridge REST API client
Ruby
3
star
10

pubmed_xml2rdbms

Loads citation records from the annual MEDLINE/PubMed XML format distribution into a MySQL table
Java
3
star
11

healthdata_metadata_challenge

Java
3
star
12

mc_sinatra

MC Sinatra is a skeleton Sinatra application and bootstrap/runtime environment that allows for the use of models, controllers, and helpers for creating simple, easy-to-understand web APIs.
Ruby
2
star
13

resource_access_tools

Java-based code for running the Resource Access Tool population
Java
2
star
14

ontoportal_utilities

A set of scripts for benchmarking and troubleshooting issues with NCBO software
Ruby
2
star
15

hcomp_ontology_evaluation

Source code for creating and managing Mechanical Turk tasks for ontology evaluation via human computation
Java
2
star
16

sparql_http

SPARQL_HTTP is a SPARQL HTTP Client for Ruby. It is developed together with the Goo library but it hash been designed as an standalone component that can be used separately.
Ruby
2
star
17

ncbo_migration

Scripts for migrating data from older NCBO systems to newer ones
Ruby
1
star
18

resource_index

Library for working with NCBO's Resource Index backend system
Ruby
1
star
19

resource_index_ruby_client

The NCBO Resource Index Gem is a Ruby client for NCBO's Rsource Index Web service
Ruby
1
star
20

ncbo_api_benchmark

A set scripts to create logs of calls that can be run in Jmeter. Only compatible with the new infrastructure to be released in 2013.
Python
1
star
21

ncbo.github.io

1
star
22

prototype_bioportal_rest_rails

This is a prototype BioPortal web service using rails-api as the framework
Ruby
1
star
23

resource_index_workflow

Java
1
star
24

knowledge

Knowledge transfer materials
1
star
25

bioportal_mappings

A project to generate ontology mappings for BioPortal
Ruby
1
star
26

bioportal-sparql-proxy

This is a django app that acts as a proxy for BioPortal's public triple store. It uses a modified version of the SNORQL browser to help the navigation across graphs and codemirror for syntax highlighting.
JavaScript
1
star
27

bfo

This is a copy of The Basic Formal Ontology (BFO). For testing and reliability NCBO/BioPortal needs to maintain its own copy of BFO.
1
star