mrvollger/Data-Analysis-for-SDs-in-T2T-CHM13

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R
Created almost 4 years ago
Updated about 3 years ago

mrvollger/Data-Analysis-for-SDs-in-T2T-CHM13

mrvollger

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Figures for the CHM13 T2T SD paper.

StainedGlass

Make colorful identity heatmaps of genomic sequence

rustybam

bioinformatics toolkit in rust

SDA

Segmental Duplication Assembler (SDA).

SmkTemplate

A template repository for snakemake workflows.

NucFreq

SafFire

segDupPlots

fibertools

Jupyter Notebook

minimiro

Jupyter Notebook

fibertools-rs

Tools for fiberseq data written in rust.

Alignment-plots

Interactive dot plots pre StainedGlass

k-mer-variant-phasing

fastCN-smk

asm-to-reference-alignment

ideogram

CSE546

long_read_nrg

Jupyter Notebook

utilities

random useful scripts for my projects

fiberseq

Jupyter Notebook

Rhodonite

A workflow for modularly running various repeat masking programs

mrvollger.github.io

mutyper_workflow

sd-divergence-and-igc-figures

A repository with my R code for making figures showing SD divergence and inter-locus gene conversion

BAC_scripts

Scripts of looking at BACs

sd-divergence

hicanu_sd_analysis

GeoTasker

simple_quickmerge

SnakemakeTutorial

Snakemake Tutorial

ont_base_calling

TRTR

consensus_regions

HiFi_Asm

PlaceONT

PhaseONT

GolgaPrimates

mutationAnalysis

Mutation analysis of yeast: diploids, haploids, snps, and crossovers.

GFA

grafite

fastmatch

levio-smk

assembly_workflows

Interconnected snakemake workflows for annotation and analysis of assemblies

Jupyter Notebook

bac_abp