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StainedGlass
Make colorful identity heatmaps of genomic sequenceSDA
Segmental Duplication Assembler (SDA).SmkTemplate
A template repository for snakemake workflows.SafFire
NucFreq
segDupPlots
Data-Analysis-for-SDs-in-T2T-CHM13
Figures for the CHM13 T2T SD paper.minimiro
fibertools-rs
Tools for fiberseq data written in rust.Alignment-plots
Interactive dot plots pre StainedGlassk-mer-variant-phasing
fastCN-smk
ideogram
CSE546
long_read_nrg
utilities
random useful scripts for my projectsfiberseq
Rhodonite
A workflow for modularly running various repeat masking programsmrvollger.github.io
mutyper_workflow
sd-divergence-and-igc-figures
A repository with my R code for making figures showing SD divergence and inter-locus gene conversionBAC_scripts
Scripts of looking at BACssd-divergence
hicanu_sd_analysis
GeoTasker
simple_quickmerge
TRTR
SnakemakeTutorial
Snakemake Tutorialasm-to-reference-alignment
ont_base_calling
consensus_regions
PhaseONT
HiFi_Asm
PlaceONT
GolgaPrimates
mutationAnalysis
Mutation analysis of yeast: diploids, haploids, snps, and crossovers.fibertools
fastmatch
GFA
grafite
GFA utilitieslevio-smk
bac_abp
assembly_workflows
Interconnected snakemake workflows for annotation and analysis of assembliesLove Open Source and this site? Check out how you can help us