mrvollger/assembly_workflows

Stars
1
Language
Jupyter Notebook
Created over 4 years ago
Updated almost 3 years ago

mrvollger/assembly_workflows

mrvollger

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Interconnected snakemake workflows for annotation and analysis of assemblies

StainedGlass

Make colorful identity heatmaps of genomic sequence

rustybam

bioinformatics toolkit in rust

SDA

Segmental Duplication Assembler (SDA).

SmkTemplate

A template repository for snakemake workflows.

NucFreq

SafFire

segDupPlots

minimiro

Jupyter Notebook

fibertools

Jupyter Notebook

Data-Analysis-for-SDs-in-T2T-CHM13

Figures for the CHM13 T2T SD paper.

fibertools-rs

Tools for fiberseq data written in rust.

Alignment-plots

Interactive dot plots pre StainedGlass

k-mer-variant-phasing

fastCN-smk

asm-to-reference-alignment

ideogram

CSE546

long_read_nrg

Jupyter Notebook

utilities

random useful scripts for my projects

fiberseq

Jupyter Notebook

Rhodonite

A workflow for modularly running various repeat masking programs

mrvollger.github.io

mutyper_workflow

sd-divergence-and-igc-figures

A repository with my R code for making figures showing SD divergence and inter-locus gene conversion

BAC_scripts

Scripts of looking at BACs

sd-divergence

hicanu_sd_analysis

GeoTasker

simple_quickmerge

SnakemakeTutorial

Snakemake Tutorial

TRTR

consensus_regions

ont_base_calling

HiFi_Asm

PlaceONT

PhaseONT

GolgaPrimates

mutationAnalysis

Mutation analysis of yeast: diploids, haploids, snps, and crossovers.

GFA

grafite

fastmatch

levio-smk

bac_abp