markrobinsonuzh/UZH_EpiBiostat_MethodsSeminar_SS2020_DeepLearning

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markrobinsonuzh/UZH_EpiBiostat_MethodsSeminar_SS2020_DeepLearning

markrobinsonuzh

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UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning

conquer

consistent quantification of external RNA-seq data sets

scRNAseq_clustering_comparison

A study to compare methods for clustering of scRNA-seq data

CrispRVariants

diff_splice_paper

Code for differential splicing comparison paper (Soneson, Matthes, et al.)

cytofWorkflow

TreeSummarizedExperiment

An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension

DAMEfinder

Finds DAMEs - Differential Allelicly MEthylated regions

scRNA_pipelines_paper

benchmarkR

Tools in R for benchmarking methods (generally on a genome-scale)

CrispRvariants_manuscript

sc_benchmark_metaanalysis

R scripts for the analysis of a bunch of single cell computational method benchmarks

CrispRVariantsLite

Shiny App to accompany CrispRVariants package

os_monitor

allele_specificity_paper

Analysis of allele-specific methylation (and changes in it)

treeAGG

R package for inferring aggregation up a tree

samanta_cytof_analysis_code

R code for cytof analysis in "Novel pro-inflammatory AGM-associated macrophages are involved in embryonic development of hematopoietic stem cells"

2016-07-18-zurich

compgen_rnaseq_2016