markrobinsonuzh/samanta_cytof_analysis_code

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markrobinsonuzh/samanta_cytof_analysis_code

markrobinsonuzh

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R code for cytof analysis in "Novel pro-inflammatory AGM-associated macrophages are involved in embryonic development of hematopoietic stem cells"

conquer

consistent quantification of external RNA-seq data sets

scRNAseq_clustering_comparison

A study to compare methods for clustering of scRNA-seq data

CrispRVariants

diff_splice_paper

Code for differential splicing comparison paper (Soneson, Matthes, et al.)

cytofWorkflow

UZH_EpiBiostat_MethodsSeminar_SS2020_DeepLearning

UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning

TreeSummarizedExperiment

An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension

DAMEfinder

Finds DAMEs - Differential Allelicly MEthylated regions

scRNA_pipelines_paper

benchmarkR

Tools in R for benchmarking methods (generally on a genome-scale)

CrispRvariants_manuscript

sc_benchmark_metaanalysis

R scripts for the analysis of a bunch of single cell computational method benchmarks

CrispRVariantsLite

Shiny App to accompany CrispRVariants package

os_monitor

allele_specificity_paper

Analysis of allele-specific methylation (and changes in it)

treeAGG

R package for inferring aggregation up a tree

2016-07-18-zurich

compgen_rnaseq_2016