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niffler
Simple and transparent support for compressed files.nthash
ntHash implementation in Rust2018-python-rust
This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.phd
dc-compilers
Learning Compiler Construction by Examplesminifloat
C++ 11 minifloat type implementationukhs
Universal K-mer Hitting Set library in Rustsourmash-rust
Rust implementation of sourmash core functionalitybitmagic-rs
2017-recomb
Poster presented at RECOMB 20172020-07-22-mag-search
thalassa
Grid editor for ocean models. Supports MOM4p1 grids (tested with tripolar grids) and outputs a file ready to be used as input for edit_grid.2018-sms
Poster and talk presented at Bioinformatics for the Microbiome Symposium at Stanford on 2018-09-24bosun
Bosun is a runtime environment for BESM and associated models. It is used to document and automate the tasks related to running a climate model (prepare inputs, compile the code, run the model, archive the results). It is based on Fabric and can be used as a library or CLI.2020-11-02-greyhound
2020-cami
Preparing sourmash for CAMI 2 evaluations2016-sbt-minhash
2024-07-26-sra-metadata
fastqstream
A Stream transform for parsing FASTQ files into records.decoct
The essence of sourmash. An experimental CLI with a subset of the sourmash features, mainly used to drive development of features in the core library.cse891-parallel-computing
MSU CSE891 Parallel Programming course - my contentmaestrograd
Ah, college days... A bunch of projects I've done as an undergrad, UFSCar 2004-2010.sourmash-node
[DEPRECATED] a proof-of-concept implementation of sourmash in JS. Current NPM package is built from https://github.com/luizirber/sourmash-rust using wasm-bindgen.bioinfo
Bioinformatics scriptssnake.js
Snake - From terminal to browserrosalind
Rosalind problemsHand
It's not a framework, but it helps to write screen scrapers. You only need to implement one for generate the data, and optionally another to generate the description (or body of the feed item), and then you have a shiny new feed!hypothesis-bio
pythonbrasil9
Presentations for Python Brasil 9alphalpha-bot
Plugins for alphalpha, our supybot IRC bot.talk-notes-generator
shrekenc
This is a small project that we put together for a competition at university. An Arduino and a N800 were used.2016-cazy
wort-dnd
BugBrother
2023-10-13-pebblescout-check
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