luizirber/ukhs

Stars
10
Rank 1,774,336 (Top 36 %)
Language
Rust
License
Apache License 2.0
Created over 5 years ago
Updated over 3 years ago

luizirber/ukhs

luizirber

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Universal K-mer Hitting Set library in Rust

niffler

Simple and transparent support for compressed files.

nthash

ntHash implementation in Rust

2018-python-rust

This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.

phd

Jupyter Notebook

dc-compilers

Learning Compiler Construction by Examples

minifloat

C++ 11 minifloat type implementation

sourmash-rust

Rust implementation of sourmash core functionality

bitmagic-rs

2017-recomb

Poster presented at RECOMB 2017

2020-07-22-mag-search

Jupyter Notebook

thalassa

Grid editor for ocean models. Supports MOM4p1 grids (tested with tripolar grids) and outputs a file ready to be used as input for edit_grid.

2018-sms

Poster and talk presented at Bioinformatics for the Microbiome Symposium at Stanford on 2018-09-24

bosun

Bosun is a runtime environment for BESM and associated models. It is used to document and automate the tasks related to running a climate model (prepare inputs, compile the code, run the model, archive the results). It is based on Fabric and can be used as a library or CLI.

2020-11-02-greyhound

2019-12-13-pyjamas

Apresentação para o Pyjamas 2019

Jupyter Notebook

2020-cami

Preparing sourmash for CAMI 2 evaluations

2016-sbt-minhash

Jupyter Notebook

cse891-parallel-computing

MSU CSE891 Parallel Programming course - my content

fastqstream

A Stream transform for parsing FASTQ files into records.

decoct

The essence of sourmash. An experimental CLI with a subset of the sourmash features, mainly used to drive development of features in the core library.

maestrograd

Ah, college days... A bunch of projects I've done as an undergrad, UFSCar 2004-2010.

sourmash-node

[DEPRECATED] a proof-of-concept implementation of sourmash in JS. Current NPM package is built from https://github.com/luizirber/sourmash-rust using wasm-bindgen.

bioinfo

Bioinformatics scripts

snake.js

Snake - From terminal to browser

rosalind

Rosalind problems

hypothesis-bio

pythonbrasil9

Presentations for Python Brasil 9

alphalpha-bot

Plugins for alphalpha, our supybot IRC bot.

talk-notes-generator

shrekenc

This is a small project that we put together for a competition at university. An Arduino and a N800 were used.

wort-dnd

2016-cazy

Jupyter Notebook

Hand

It's not a framework, but it helps to write screen scrapers. You only need to implement one for generate the data, and optionally another to generate the description (or body of the feed item), and then you have a shiny new feed!

BugBrother