Discover luisibanez/MicroscopyTutorial Open Source project

Plugins for the V3D application, that provide ITK image segmentation and registration functionalities. Please note that the official repository for this code has now moved to https://svn.janelia.org/penglab/projects/v3d

ITK-V3D-Plugins

Registration between 2D contour and a 3D image based on ITK

ContourToSurfaceRegistration

Tutorial on the M Programming Language

M-Tutorial

Practice code while reading The C++ Programming Language, 4th edition, specially the new C++11 features.

Cxx11

Streaming ~10Gb images with ITK

LargeImageStreaming

Repository of Shapes for 3D Printing

ShapesFor3DPrinting

LargeImageDatabaseITKIO

Interfacing ITK IO classes to databases containing large images

Introduction Tutorial to TensorFlow

tensorflow_tutorial

Jupyter Notebook

ImageRegistration

Interactive image registration

Open Source Software Course at Rensselaer Polytechnic Institute

OpenSourceSoftwarePracticeCourse

Segmentation of Red Blood Cell Images

RedCellsSegmentationAndQuantification

ITK Support for reading and writing WebP images

ITKWebPImageIO

Scripts for analyzing community activity and structure

CommunityAnalyzer

Bridge between M language and R language

libtiff-4.0

Tracking libtiff 4.0

M2R

Slicer-3.6-ITKv4

Slicer release version 3.6 build using the development version of ITKv4

itk-vtk

ITK Module that provides interfaces with vtk

MesIO class to read and write ITK meshes into STL files

ITKSTLMeshIO

ICY-ITK-Plugins

ITK Plugins for ICY

Scripts used to perform NSM (Network Security Monitoring), including: collection, detection and analysis.

network-security-monitoring

Insight Journal paper on how to use CDE for creating executable papers

CDEInsightJournal

MRSpectroscopySegmentation

Image segmentation of MR spectroscopy data

Packaging fis-gtm for Fedora

fis-gtm-fedora

AmazonCloud

A quick guide for getting started with Amazon Cloud.

Scripts used to modularize ITK

itk-modulizer

Segmentation of 2D color microscopy images

TissueSegmentation

Port of MUMPS GT.M to the Raspberry Pi (ARM Architecture)

fis-gtm-raspberry-pi

OpenSourceSoftwarePracticesCourse

Materials used at the Open Source Software Practices course taught at Rensselaer Polytechnic and at SUNY Albany

Linux-Kernel-Training-Session-I

Introduction to contributing patches to the Linux Kernel

luisibanez

Repository for my user pages

MDWS-To-Be-Deleted

Medical Domain Web Services (MDWS)

plc

Consent to Research source repo

Data analysis of web-browsers market share.

browsers-www-monthly

Prototype portal for building ITK plugins as a web service.

ProjectX

test

webITK

cssi-appengine-templates-01

Slides for CSSI class on using templates for AppEngine apps.

HTML

debian-med-vista

Packaging VistA for Debian

VistA-installation-scripts

Scripts for installing VistA automatically.

Slides for a Talk on Open Source Practices

OpenSourceSoftwarePracticesPresentation

ITKExamples

Course to introduce beginners to computer programming

IntroductionToProgramming

Assembly

running-with-zebras-101

Exploring the use of AppEngine for the Rare Diseases hackathon.

Collection of ITK-based command line tools to perform atlas-based segmentation.

AtlasBasedSegmentation

Presentation for the 2011 Workshop on Reproducible Research

ReproducibleResearchWorkshopPresentation

vista-debian-med-package

Mirror of debian-med package for VistA

Sample minimal application for Google Glass

gdk-line-sample

Manual and public database of self information

QuantifiedSelf

open-source-databases-tutorial

Agile tutorial on the use of open source databases

JavaScript

ArchimedesPalimsestITK

ITK Algorithms applied to Archimedes Palimset image data.