jmonlong/Hippocamplus

Stars
30
Rank 836,918 (Top 17 %)
Language
HTML
License
GNU General Publi...
Created almost 9 years ago
Updated 10 months ago

jmonlong/Hippocamplus

jmonlong

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

A place to gather useful information I keep on forgetting.

PopSV

Population-based detection of structural variation from High-Throughput Sequencing.

sveval

Functions to compare a SV call sets against a truth set.

sQTLseekeR

R package to detect splicing QTLs (sQTLs)

pangenome-evaluation

Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map

manu-vgsv

scCNAutils

Functions to analyze copy number aberrations in single-cell data

sv-nicu

Annotation pipeline for structural variants found in long reads (e.g. ONT) in NICU patients.

jmonlong.github.io

reppopsv

KyotoWorkshop16-LinuxIntro

docker-wambam

Docker for wambam (https://github.com/rlorigro/wambam)

poly-wdl

Polymode for the Worflow Description Language in Emacs

terra-utils

Docker images and notebook I use(d) on Terra (https://app.terra.bio/)

Jupyter Notebook

MonBUG17_Gviz

Short workshop on how to use Gviz package.

workshop-hprc-hugo24

variant_annotation_wf

Workflow to annotate SNVs, indels, and structural variants

docker-smoothxg

Container for smoothxg

docker-graphaligner

Docker container for GraphAligner

docker-pgge

Docker container to run pgge (https://github.com/pangenome/pgge)