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Hippocamplus
A place to gather useful information I keep on forgetting.PopSV
Population-based detection of structural variation from High-Throughput Sequencing.sveval
Functions to compare a SV call sets against a truth set.sQTLseekeR
R package to detect splicing QTLs (sQTLs)manu-vgsv
scCNAutils
Functions to analyze copy number aberrations in single-cell datasv-nicu
Annotation pipeline for structural variants found in long reads (e.g. ONT) in NICU patients.jmonlong.github.io
Personal pagereppopsv
KyotoWorkshop16-LinuxIntro
docker-wambam
Docker for wambam (https://github.com/rlorigro/wambam)poly-wdl
Polymode for the Worflow Description Language in Emacsterra-utils
Docker images and notebook I use(d) on Terra (https://app.terra.bio/)MonBUG17_Gviz
Short workshop on how to use Gviz package.workshop-hprc-hugo24
variant_annotation_wf
Workflow to annotate SNVs, indels, and structural variantsdocker-smoothxg
Container for smoothxgdocker-graphaligner
Docker container for GraphAlignerdocker-pgge
Docker container to run pgge (https://github.com/pangenome/pgge)Love Open Source and this site? Check out how you can help us