Jean Monlong (@jmonlong)
github

jmonlong

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Top repositories

1

Hippocamplus

A place to gather useful information I keep on forgetting.
HTML
30
star
2

PopSV

Population-based detection of structural variation from High-Throughput Sequencing.
R
28
star
3

sveval

Functions to compare a SV call sets against a truth set.
R
24
star
4

sQTLseekeR

R package to detect splicing QTLs (sQTLs)
R
14
star
5

pangenome-evaluation

Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map
Python
10
star
6

manu-vgsv

HTML
9
star
7

scCNAutils

Functions to analyze copy number aberrations in single-cell data
R
8
star
8

sv-nicu

Annotation pipeline for structural variants found in long reads (e.g. ONT) in NICU patients.
R
6
star
9

jmonlong.github.io

Personal page
TeX
4
star
10

reppopsv

R
2
star
11

KyotoWorkshop16-LinuxIntro

HTML
1
star
12

docker-wambam

Docker for wambam (https://github.com/rlorigro/wambam)
Dockerfile
1
star
13

poly-wdl

Polymode for the Worflow Description Language in Emacs
Emacs Lisp
1
star
14

terra-utils

Docker images and notebook I use(d) on Terra (https://app.terra.bio/)
Jupyter Notebook
1
star
15

MonBUG17_Gviz

Short workshop on how to use Gviz package.
HTML
1
star
16

workshop-hprc-hugo24

HTML
1
star
17

variant_annotation_wf

Workflow to annotate SNVs, indels, and structural variants
WDL
1
star
18

docker-smoothxg

Container for smoothxg
Dockerfile
1
star
19

docker-graphaligner

Docker container for GraphAligner
Dockerfile
1
star
20

docker-pgge

Docker container to run pgge (https://github.com/pangenome/pgge)
Dockerfile
1
star