jleluyer/chromonomer_workflow

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Created over 8 years ago
Updated over 8 years ago

jleluyer/chromonomer_workflow

jleluyer

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Workflow for the improvement of genetic maps and genome assemblies based on Chromonomer tools

lepmap2_workflow

Pipeline for linkage map construction from NGS data

wgcna_workflow

Analysis of co-expression networks from RNA-seq data

rna-seq_denovo_workflow

Pipeline for transcriptome de novo assembly

pathview_workflow

Quick workflow for KEGG pathways visualization in R using Pathview

epigenetics_workflow

Pipeline for RRBS data analysis without a reference genome

rna-seq_mapping_workflow

Pipeline for RNAseq data analysis based on reference genome

angsd_genotyping_workflow

Pipeline based on ANGSD tools for genotypes calling

genome_annotation_workflow

Genome annotation : Tools compilation

metatranscriptomics_workflow

Pipeline for analyses of bacterial metatranscriptomics data

epigenetic_wgenome_workflow

Pipeline for DNA methylation and genetic polymorphism analysis from RRBS data

Transcriptome_Pmargaritifera

epigenetics_multifactor_workflow

Pipeline for WGBS analysis with multifactorial experimental designs

acclimabest

Acclimatation du bénitier et ses symbiontes à la température - Labex Corail

permutation2randomforest

Tool for permutating factors in genomic datasets and run Random Forest analysis

sibship_SNPpanel

Sibship reconstruction from SNP panel genotyping

circos_plot

circos plot with OmicCircos package

gatk_workflow

scripts

github_presentation