Discover jianhong/trackViewerBiocAsia2020Workshop Open Source project

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This package will create the docker file for the tools used for trackViewer, the sample code and files to run the pipeline, and the slides for the course.

trackViewer

A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot

trackViewer.documentation

documentation for trackViewer

ATACseqQC

ATAC-seq Quality Control

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

ChIPpeakAnno

ChIPseqStepByStep

Integrated analysis and visualization of ChIP-seq data using ChIPpeakAnno, GeneNetworkBuilder and TrackViewer

scRNAseqApp

single cell RNA-seq results report system

16S_pipeline

16S RNA microbiome pipeline

Nextflow

ribosomeProfilingQC

An R package for quality assessment of ribosome profiling

MintChIP

pipeline for MintChIP

Nextflow

workshop2020

workshop2020: Basic and advanced bioinformatics for RegenerationNEXT

motifStack.documentation

documentation of motifStack

HMMtBroadPeak

call broad peak by a modified Baum_Welch algorithm that supports multi-dimensional Student's t emission.

shotgun

Shotgun Sequencing Pipelines

Nextflow

GeneNetworkBuilder

Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data

JavaScript

NADfinder

Call wide peaks for sequencing data

genomictools

docker file for genomic tools

Dockerfile

primerDesigner

pipeline for primer3

uShuffleR

R wrapper and command tool for uShuffle

geomeTriD

A package for interactive 3D plot of epigenetic data

jianhong/trackViewerBiocAsia2020Workshop

jianhong

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