Discover jianhong/HMMtBroadPeak Open Source project

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Language
R
License
MIT License
Created over 3 years ago
Updated 5 months ago

jianhong

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call broad peak by a modified Baum_Welch algorithm that supports multi-dimensional Student's t emission.

trackViewer

A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot

trackViewer.documentation

documentation for trackViewer

ATACseqQC

ATAC-seq Quality Control

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

ChIPpeakAnno

ChIPseqStepByStep

Integrated analysis and visualization of ChIP-seq data using ChIPpeakAnno, GeneNetworkBuilder and TrackViewer

scRNAseqApp

single cell RNA-seq results report system

16S_pipeline

16S RNA microbiome pipeline

Nextflow

ribosomeProfilingQC

An R package for quality assessment of ribosome profiling

MintChIP

pipeline for MintChIP

Nextflow

workshop2020

workshop2020: Basic and advanced bioinformatics for RegenerationNEXT

motifStack.documentation

documentation of motifStack

shotgun

Shotgun Sequencing Pipelines

Nextflow

trackViewerBiocAsia2020Workshop

This package will create the docker file for the tools used for trackViewer, the sample code and files to run the pipeline, and the slides for the course.

Dockerfile

GeneNetworkBuilder

Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data

JavaScript

NADfinder

Call wide peaks for sequencing data

genomictools

docker file for genomic tools

Dockerfile

primerDesigner

pipeline for primer3

uShuffleR

R wrapper and command tool for uShuffle

geomeTriD

A package for interactive 3D plot of epigenetic data

jianhong/HMMtBroadPeak

jianhong

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