jason-weirather/xCell

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Python
License
Apache License 2.0
Created over 6 years ago
Updated over 6 years ago

jason-weirather/xCell

jason-weirather

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CLI and python module for pipeline deployment of Aran et. al.'s xCell https://doi.org/10.1186/s13059-017-1349-1

AlignQC

Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis results.

hla-polysolver

Fork of the Polysolver project

CIBERSORT

A shell to facilitate loading / running CIBERSORT software in structured environments

GSVA

A command-line interface and python module for R's GSVA bioconductor package

pythologist

Read and analyze exports of microscopy image data.

Jupyter Notebook

good-neighbors

Identify neighborhoods based on local cell populations.

Jupyter Notebook

IDP

Fork of the IDP hybrid-seq alignment -- Apache 2.0 licensed -- Copyright 2014 Kin Fai Au

baffle

Add fake data with substructure to your real data to prevent online tools from scraping your data.

multiplex-if-simulator

Simulate multiplex IF data

cio-wdl-16s-microbiome

A workflow for executing a microbiome workflow

tiff-inspector

A package for examining the structure and contents of the metadata contained within tiff files

js-seq-tools

JavaScript tools for working with biology data.

cio-mass-cytometry

js-grids

Interactive canvas grids.

py-seq-tools

Free python libraries for working with biological sequences, alignments, and formats

omeify