Jason L Weirather (@jason-weirather)
github

jason-weirather

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Top repositories

1

AlignQC

Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis results.
Python
45
star
2

hla-polysolver

Fork of the Polysolver project
Perl
26
star
3

CIBERSORT

A shell to facilitate loading / running CIBERSORT software in structured environments
Python
25
star
4

GSVA

A command-line interface and python module for R's GSVA bioconductor package
Python
11
star
5

pythologist

Read and analyze exports of microscopy image data.
Jupyter Notebook
9
star
6

good-neighbors

Identify neighborhoods based on local cell populations.
Jupyter Notebook
4
star
7

IDP

Fork of the IDP hybrid-seq alignment -- Apache 2.0 licensed -- Copyright 2014 Kin Fai Au
Python
4
star
8

baffle

Add fake data with substructure to your real data to prevent online tools from scraping your data.
Python
2
star
9

multiplex-if-simulator

Simulate multiplex IF data
Python
2
star
10

cio-wdl-16s-microbiome

A workflow for executing a microbiome workflow
TeX
1
star
11

tiff-inspector

A package for examining the structure and contents of the metadata contained within tiff files
Python
1
star
12

js-seq-tools

JavaScript tools for working with biology data.
JavaScript
1
star
13

cio-mass-cytometry

Python
1
star
14

js-grids

Interactive canvas grids.
JavaScript
1
star
15

py-seq-tools

Free python libraries for working with biological sequences, alignments, and formats
Python
1
star
16

omeify

Python
1
star
17

xCell

CLI and python module for pipeline deployment of Aran et. al.'s xCell https://doi.org/10.1186/s13059-017-1349-1
Python
1
star