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Basic Installation ================== The simplest way to compile this package is: 1. 'cd' to the directory containing the package's source code ('source'). 2. Type 'make' to compile the package. 3. Optionally, run trimAl/readAl with the examples into the 'dataset' directory to check the correct installation. By default, 'make' compiles the source code of trimAl and readAl in the current directory. After that, you can either add to PATH the current directory or move these files to '/usr/local/bin' or to '/usr/bin' using root privileges.
BIOLITMAP
Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.WfExS-backend
Workflow Execution Service BackendSmartRNASeqCaller
SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq dataopenVRE
Open Virtual Research Environmentetox
Official development repository for LimToxfega-mm
TCGA_benchmarking_workflow
Wetlab2Variations
Wetlab2Variations Workflow Demonstratorappris
APPRIS - A system for annotating alternative splice isoformspymut
dataportal
DataportaliPC-Platform-Deployment
Guidelines for deploying the iPC platform based on microservices.openEBench-nuxt
Vue Client for the OpenEBench Micro FrontendsDRS-REST-API
DRS REST API built on Express frameworkopenebench-hub
disease_perception
Personalized Comorbidity Profile GenerationDAC-Portal-backend
iPC DAC-Portal backend built on NestJS and Clean Architecture patterns and principles.benchmarking-data-model
OpenEBench Benchmarking Data Model repositorypython-extended-json-schema-validator
TCGA_benchmarking_dockers
OpenEBench TCGA benchmarking Docker declarationsDAC-Portal
iPC's Data Access Committee Portal (front + back)rd-connect_cas-dockerfiles
RD-Connect CAS / LDAP / UMI DockerfilesBP-Schema-tools
Bioinformatic Pantry Schema toolsiPC_Data_Portal
Data portal for iPC project built on React and Overture Arranger UI componentsEPICO-REST-API
EPICO / BLUEPRINT Data Analysis Portal REST APIcdw
Clinical Data WarehouseDAC-Portal-frontend
Data Access Committee (DAC) Portal: Component of the iPC Data Access frameworkwiktionary-term-fetcher
Wiktionary term fetcher, written in pythonEPICO-data-loading-scripts
EPICO + BLUEPRINT DCC database loading scriptsopenEBench_vre
iPC-Catalogue-Outbox-API-v2
iPC Catalogue Outbox API built on Express frameworkipc-wp
BackupDAC-Management-Portal
DAC-Management Portal: Component of the iPC's Data Access Framework built on Next.jsEPICO-data-model
The EPICO data model, designed using BP-Schema-toolsvre_template_tool_dockerized
ipc-dream-challenge
tdGUI
The Target Dossier (TD) goal is to provide a comprehensive view of pharmacologically relevant targets to answer questions regarding druggability, tissue expression profiles and implications in pathways, disease states and physiological mechanisms.bench_event_api
bench_event_apiRDConnect_RNASeq
RDConnect RNASeqbench_event_table
OEB_level2_data_migration
data-access-playground
A dockerized sandbox for the development of the iPC data access frameworkepico-data-analysis-portal
EPICO / BLUEPRINT Data Analysis Portal codenextcloud-file-validator
Python script that validates extensions and mimetypes of files uploaded to Nextcloud.pubmed_retrieval
docker-textmining-tools
openEbench-frontend
Frontend for the OpenEBench platformopeb-enrichers
OpenEBench metadata enrichers (citations, GitHub, etc.)GOPHER
GOPHER (originally Gene Ontology Predictor Handy Evaluation Resource System) is a continuous evaluation and assessment framework for bioinformaticsFAIRsoft_indicators
Specification of FAIRsoft indicators, by OpenEBench.oeb-fairsoft-evaluator-post-installation
Landing page for successful installation of the OEB FAIRsoft Evaluator tool in the Software Observatoryobservatory-api
Software Observatory APIgithub-metadata-api
API to extract metadata from a GitHub repository and update files.Love Open Source and this site? Check out how you can help us