Discover inab/openebench-hub Open Source project

Workflow Execution Service Backend

WfExS-backend

SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data

SmartRNASeqCaller

Open Virtual Research Environment

openVRE

Official development repository for LimTox

etox

fega-mm

TCGA_benchmarking_workflow

Wetlab2Variations Workflow Demonstrator

Wetlab2Variations

Common Workflow Language

appris

APPRIS - A system for annotating alternative splice isoforms

pymut

dataportal

iPC-Platform-Deployment

Guidelines for deploying the iPC platform based on microservices.

openEBench-nuxt

Vue Client for the OpenEBench Micro Frontends

DRS REST API built on Express framework

DRS-REST-API

Personalized Comorbidity Profile Generation

disease_perception

iPC DAC-Portal backend built on NestJS and Clean Architecture patterns and principles.

DAC-Portal-backend

TypeScript

benchmarking-data-model

OpenEBench Benchmarking Data Model repository

python-extended-json-schema-validator

OpenEBench TCGA benchmarking Docker declarations

TCGA_benchmarking_dockers

iPC's Data Access Committee Portal (front + back)

DAC-Portal

rd-connect_cas-dockerfiles

RD-Connect CAS / LDAP / UMI Dockerfiles

Shell

BP-Schema-tools

Bioinformatic Pantry Schema tools

Perl

iPC_Data_Portal

Data portal for iPC project built on React and Overture Arranger UI components

SCSS

EPICO-REST-API

EPICO / BLUEPRINT Data Analysis Portal REST API

Perl

cdw

Clinical Data Warehouse

Data Access Committee (DAC) Portal: Component of the iPC Data Access framework

DAC-Portal-frontend

SCSS

wiktionary-term-fetcher

Wiktionary term fetcher, written in python

EPICO + BLUEPRINT DCC database loading scripts

EPICO-data-loading-scripts

Perl

openEBench_vre

PHP

iPC-Catalogue-Outbox-API-v2

iPC Catalogue Outbox API built on Express framework

DAC-Management Portal: Component of the iPC's Data Access Framework built on Next.js

ipc-wp

Backup

PHP

DAC-Management-Portal

The EPICO data model, designed using BP-Schema-tools

EPICO-data-model

Web Ontology Language

vre_template_tool_dockerized

The Target Dossier (TD) goal is to provide a comprehensive view of pharmacologically relevant targets to answer questions regarding druggability, tissue expression profiles and implications in pathways, disease states and physiological mechanisms.

ipc-dream-challenge

tdGUI

bench_event_api

RDConnect_RNASeq

bench_event_table

OEB_level2_data_migration

A dockerized sandbox for the development of the iPC data access framework

data-access-playground

epico-data-analysis-portal

EPICO / BLUEPRINT Data Analysis Portal code

Python script that validates extensions and mimetypes of files uploaded to Nextcloud.

nextcloud-file-validator

pubmed_retrieval

docker-textmining-tools

Frontend for the OpenEBench platform

openEbench-frontend

TypeScript

opeb-enrichers

OpenEBench metadata enrichers (citations, GitHub, etc.)

GOPHER (originally Gene Ontology Predictor Handy Evaluation Resource System) is a continuous evaluation and assessment framework for bioinformatics

GOPHER

Specification of FAIRsoft indicators, by OpenEBench.

FAIRsoft_indicators

Landing page for successful installation of the OEB FAIRsoft Evaluator tool in the Software Observatory

oeb-fairsoft-evaluator-post-installation

observatory-api

Software Observatory API

API to extract metadata from a GitHub repository and update files.

github-metadata-api