Explore @inab Open Source projects

Spanish National Bioinformatics Institute (@inab)

inab

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279
Global Org. Rank 33,686 (Top 11 %)
Registered almost 12 years ago
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Python
28.6 %

JavaScript
26.5 %

HTML
14.3 %

Perl
8.2 %

SCSS 4.1 %

PHP
4.1 %

TypeScript
4.1 %

Nextflow 2.0 %

Shell
2.0 %

Common Workflow Language 2.0 %

Web Ontology Language 2.0 %

C++
2.0 %
Location 🇪🇸 Spain
Country Total Rank 1,217
Country Ranking

Common Workflow Language 1

Web Ontology Language 6

Nextflow 16

Perl
63

C++
90

SCSS 161

HTML
339

Python
603

JavaScript
1,098

TypeScript
1,407

PHP
1,705

Shell
2,246

trimal

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

BIOLITMAP

Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.

WfExS-backend

Workflow Execution Service Backend

SmartRNASeqCaller

SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data

openVRE

Open Virtual Research Environment

etox

Official development repository for LimTox

fega-mm

TCGA_benchmarking_workflow

Wetlab2Variations

Wetlab2Variations Workflow Demonstrator

Common Workflow Language

appris

APPRIS - A system for annotating alternative splice isoforms

pymut

dataportal

iPC-Platform-Deployment

Guidelines for deploying the iPC platform based on microservices.

openEBench-nuxt

Vue Client for the OpenEBench Micro Frontends

DRS-REST-API

DRS REST API built on Express framework

openebench-hub

disease_perception

Personalized Comorbidity Profile Generation

DAC-Portal-backend

iPC DAC-Portal backend built on NestJS and Clean Architecture patterns and principles.

benchmarking-data-model

OpenEBench Benchmarking Data Model repository

python-extended-json-schema-validator

TCGA_benchmarking_dockers

OpenEBench TCGA benchmarking Docker declarations

DAC-Portal

iPC's Data Access Committee Portal (front + back)

rd-connect_cas-dockerfiles

RD-Connect CAS / LDAP / UMI Dockerfiles

BP-Schema-tools

Bioinformatic Pantry Schema tools

iPC_Data_Portal

Data portal for iPC project built on React and Overture Arranger UI components

EPICO-REST-API

EPICO / BLUEPRINT Data Analysis Portal REST API

cdw

Clinical Data Warehouse

DAC-Portal-frontend

Data Access Committee (DAC) Portal: Component of the iPC Data Access framework

wiktionary-term-fetcher

Wiktionary term fetcher, written in python

EPICO-data-loading-scripts

EPICO + BLUEPRINT DCC database loading scripts

openEBench_vre

iPC-Catalogue-Outbox-API-v2

iPC Catalogue Outbox API built on Express framework

ipc-wp

DAC-Management-Portal

DAC-Management Portal: Component of the iPC's Data Access Framework built on Next.js

EPICO-data-model

The EPICO data model, designed using BP-Schema-tools

Web Ontology Language

vre_template_tool_dockerized

ipc-dream-challenge

tdGUI

The Target Dossier (TD) goal is to provide a comprehensive view of pharmacologically relevant targets to answer questions regarding druggability, tissue expression profiles and implications in pathways, disease states and physiological mechanisms.

bench_event_api

bench_event_api

RDConnect_RNASeq

RDConnect RNASeq

bench_event_table

OEB_level2_data_migration

data-access-playground

A dockerized sandbox for the development of the iPC data access framework

epico-data-analysis-portal

EPICO / BLUEPRINT Data Analysis Portal code

nextcloud-file-validator

Python script that validates extensions and mimetypes of files uploaded to Nextcloud.

pubmed_retrieval

docker-textmining-tools

openEbench-frontend

Frontend for the OpenEBench platform

opeb-enrichers

OpenEBench metadata enrichers (citations, GitHub, etc.)

GOPHER

GOPHER (originally Gene Ontology Predictor Handy Evaluation Resource System) is a continuous evaluation and assessment framework for bioinformatics

FAIRsoft_indicators

Specification of FAIRsoft indicators, by OpenEBench.

oeb-fairsoft-evaluator-post-installation

Landing page for successful installation of the OEB FAIRsoft Evaluator tool in the Software Observatory

observatory-api

Software Observatory API

github-metadata-api

API to extract metadata from a GitHub repository and update files.