idekerlab/llm_evaluation_for_gene_set_interpretation

Stars
9
Rank 1,939,727 (Top 39 %)
Language
Jupyter Notebook
License
MIT License
Created over 1 year ago
Updated 4 months ago

idekerlab/llm_evaluation_for_gene_set_interpretation

idekerlab

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Code space for 'Evaluation of large language models for discovery of gene set function'

DrugCell

A visible neural network model for drug response prediction

DCell

DCell browser and gene deletion simulator

pyNBS

Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

Jupyter Notebook

MuSIC

Multi-Scale Integrated Cell

TCRP

Few shot learning for cancer

Network_Evaluation_Tools

Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.

Jupyter Notebook

cyREST

DEPRECATED. Please visit our new repository (cytoscape/cyREST)

cy-rest-R

Example R script to use Cytoscape via RESTful API module.

hiview

HiView: the universal viewer for hierarchical data

heat-diffusion

cy-rest-python

cyREST examples for Python users.

cy-net-share

A simple web application to share network files generated with Cytoscape.

nexo

Prototype for NeXO web app.

tsri-lecture

Course material for TSRI network biology lecture

Jupyter Notebook

dot-app

Cytoscape application for exporting to .dot file format

web.cytoscape

New version of cyNetShare

vizbi-2015

Sample data and notebooks for VIZBI 2015 tutorial session

jActiveModules

cellmaps_pipeline

cy-rest-node

Node.js examples for cyREST module.

cxmateold

A RESTFUL network API proxy service for network algorithms

sdcsb-advanced-tutorial

Course material for SDCSB Advanced Cytoscape Workshop (4/17/2015)

auto-graph-visualizer

Automatic graph visualizer for the Cytoscape ecosystem

neoelsa

ce-components

Example implementation for CE component collection

large-graph-renderer

Webpack version of LGR

multitask_vnn

Multi-task learning VNN

BiNGO

ci-service-template

Template code to create new Cytoscape CI services.

TreeViewer

D3-based DAG viewer for DCell web applicaiton

cyrest-examples

Latest example notebooks for CyREST

Jupyter Notebook

nest_vnn

VNN for drug response using NeST

qfieldlayout

obo-exporter

Jupyter Notebook

cellmaps_annotate_hierarchy

Jupyter Notebook

network-viewer

cdhidef

webservice-ncbi-client

NCBI Client for CYtoscape 3. Moved from the core.

ndex-web

React webapp code for CyNDEx2 Cytoscape App

diffusion-old

Heat diffusion daemon

Automatic_graph_visualizer

Jupyter Notebook

cy-components

Monorepo for all React components maintained by Ideker Lab

drugcell-web-app

nexo-client

Client side module for NeXO web app.

cdoslom

Packaged OSLOM algorithm towards standardized community detection services for Cytoscape

cellmaps_utils

cxio_python

ddot_rest_server

NBGWAS-Frontend

A ReactJS Frontend page for the NBGWAS service created by Samson Fong and Dan Carlin

science-direct-app

cyEZVis

Adding support for CalVR via Mugic plugin.

ndex-valet-electron

NDEx Valet Electron app

GSAI