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DrugCell
A visible neural network model for drug response predictionDCell
DCell browser and gene deletion simulatorpyNBS
Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)MuSIC
Multi-Scale Integrated CellTCRP
Few shot learning for cancerNetwork_Evaluation_Tools
Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.cyREST
DEPRECATED. Please visit our new repository (cytoscape/cyREST)cy-rest-R
Example R script to use Cytoscape via RESTful API module.hiview
HiView: the universal viewer for hierarchical dataheat-diffusion
cy-rest-python
cyREST examples for Python users.llm_evaluation_for_gene_set_interpretation
Code space for 'Evaluation of large language models for discovery of gene set function'cy-net-share
A simple web application to share network files generated with Cytoscape.nexo
Prototype for NeXO web app.tsri-lecture
Course material for TSRI network biology lecturedot-app
Cytoscape application for exporting to .dot file formatweb.cytoscape
New version of cyNetSharevizbi-2015
Sample data and notebooks for VIZBI 2015 tutorial sessionjActiveModules
cellmaps_pipeline
cy-rest-node
Node.js examples for cyREST module.cxmateold
A RESTFUL network API proxy service for network algorithmssdcsb-advanced-tutorial
Course material for SDCSB Advanced Cytoscape Workshop (4/17/2015)auto-graph-visualizer
Automatic graph visualizer for the Cytoscape ecosystemneoelsa
ce-components
Example implementation for CE component collectionlarge-graph-renderer
Webpack version of LGRmultitask_vnn
Multi-task learning VNNBiNGO
ci-service-template
Template code to create new Cytoscape CI services.TreeViewer
D3-based DAG viewer for DCell web applicaitoncyrest-examples
Latest example notebooks for CyRESTnest_vnn
VNN for drug response using NeSTqfieldlayout
obo-exporter
cellmaps_annotate_hierarchy
network-viewer
cdhidef
webservice-ncbi-client
NCBI Client for CYtoscape 3. Moved from the core.ndex-web
React webapp code for CyNDEx2 Cytoscape Appdiffusion-old
Heat diffusion daemonAutomatic_graph_visualizer
cy-components
Monorepo for all React components maintained by Ideker Labdrugcell-web-app
nexo-client
Client side module for NeXO web app.cellmaps_utils
cxio_python
ddot_rest_server
NBGWAS-Frontend
A ReactJS Frontend page for the NBGWAS service created by Samson Fong and Dan Carlinscience-direct-app
cyEZVis
Adding support for CalVR via Mugic plugin.ndex-valet-electron
NDEx Valet Electron appGSAI
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