hackseq/October_2016

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hackseq/October_2016

hackseq

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Planning repository for Genomics Hackathon in Vancouver

hackseq19

hackseq 2019 - [*]-omics hackathon. Vancouver, BC

hackseq_projects_2016

modular-assembly-hs18

Mix and match modular genome assembler components

hackseq18

hackseq 2018 - [*]-omics hackathon. Vancouver, BC

vasco

Visualization of single cell RNA-seq data from tens of thousands of cells in real time

hackseq_projects_2017

hackseqRNA

hackseqRNA <- hackseq + RNA.society2020

hs19-var

Visualizing single-cell RNA-seq experiments at a life-size scale in 3-D

tara-cyc-hs18

hackseq_2017

Public files and discussions about hackseq 2017

2017_project_8

Analysis of tested guide RNA’s used for gene editing via CRISPR to predict optimal future guide sequences

Jupyter Notebook

2016_project_2

Design a tool to optimize the parameters of any command line tool

2016_project_6

Inferring sex chromosome and autosomal ploidy in NGS data

2016_project_4

Pseudo-WGS variant calling for common cell types aggregating ChIP-seq, RNA-seq and DHS from ENCODE and Roadmap Epigenomics data

Jupyter Notebook

2016_project_9

Selection of tag SNPs for an African SNP array by LD and haplotype based methods

hs19-flu

hs19-deep

2016_project_5

Evaluating epigenetic modifications in ChIP-seq and methylation data across cell types and states.

hs19-trends

hackathon project on the trends in bioinformatics

Indicator_contig_predictor

A two-way classifier to characterize metagenomes based on short and long read technologies

2016_project_8

Explore the use of 10x Genomics' Linked-Reads to unlock currently inaccessible parts of the genome

2017_project_5

Developing advanced R tutorials for genomic data analysis