dmnfarrell/gordon-group

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Apache License 2.0
Created about 9 years ago
Updated 5 months ago

dmnfarrell/gordon-group

dmnfarrell

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scripts and data for gordon group papers

pandastable

Table analysis in Tkinter using pandas DataFrames.

tkintertable

A pure Python library for adding tables to a Tkinter application

tablexplore

Table analysis and plotting application written in PySide2/PyQt5

epitopepredict

Python package and command line tool for epitope prediction

Jupyter Notebook

teaching

scripts and notes for learning

Jupyter Notebook

smallrnaseq

small rna-seq analysis package

pybioviz

bioinformatics visualization tools with pyviz/bokeh

Jupyter Notebook

pathogenie

Desktop tool for microbial genome annotation and gene detection

Jupyter Notebook

snipgenie

command line and desktop tool for microbial variant calling

Jupyter Notebook

epitopemap

A web application for visualizing MHC binding predictions

mtbc_analyses

Code for genomics analysis of MTBC locii.

Jupyter Notebook

learnct

Java CT Simulation

dmnfarrell.github.io

mtbdiff

Characterization of Mycobacterium tuberculosis complex species using mummer and nucdiff

Jupyter Notebook

peat

PEAT is a suite of programs for capturing, analyzing and predicting biophysical characteristics of proteins

btbabm

Agent based model for bovine TB spread in herds

Jupyter Notebook

binderapps

bokeh binder apps

batchfilerename

Batch file renaming utility written in Python

tracebtb

M.bovis WGS surveillance tool.

Jupyter Notebook